diff test-data/2.stats.expected @ 12:8fecc86e574a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c

--- a/test-data/2.stats.expected	Wed Jun 22 07:47:48 2022 +0000
+++ b/test-data/2.stats.expected	Sun Sep 08 03:23:56 2024 +0000
@@ -1,4 +1,4 @@
-# This file was produced by samtools stats (1.12+htslib-1.12) and can be plotted using plot-bamstats
+# This file was produced by samtools stats (1.20+htslib-1.20) and can be plotted using plot-bamstats
 # This file contains statistics for all reads.
 # The command line was:  stats --ref-seq reference.fa -@ 0 infile
 # CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
@@ -419,6 +419,8 @@
 FRL	35	1
 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
 LRL	35	1
+# Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count
+MAPQ	40	2
 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.