Mercurial > repos > devteam > samtools_stats

diff test-data/samtools_stats_out1__sn.tab @ 9:ab75c7ea49a5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:08:22 +0000
parents 8d500e0e0dbe
children
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--- a/test-data/samtools_stats_out1__sn.tab	Thu Oct 10 03:39:57 2019 -0400
+++ b/test-data/samtools_stats_out1__sn.tab	Tue Sep 28 16:08:22 2021 +0000
@@ -1,5 +1,5 @@
 # Summary Numbers. 
-raw total sequences:	200
+raw total sequences:	200	# excluding supplementary and secondary reads
 filtered sequences:	0
 sequences:	200
 is sorted:	1
@@ -14,6 +14,7 @@
 reads MQ0:	6	# mapped and MQ=0
 reads QC failed:	0
 non-primary alignments:	0
+supplementary alignments:	0
 total length:	50200	# ignores clipping
 total first fragment length:	25100	# ignores clipping
 total last fragment length:	25100	# ignores clipping