Mercurial > repos > devteam > samtools_stats
diff test-data/samtools_stats_out1__sn.tab @ 4:8d500e0e0dbe draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 70b38ebad0d0936f102e3e7cb70f1060347ea8c4
| author | iuc |
|---|---|
| date | Thu, 27 Sep 2018 08:59:54 -0400 |
| parents | |
| children | ab75c7ea49a5 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/samtools_stats_out1__sn.tab Thu Sep 27 08:59:54 2018 -0400 @@ -0,0 +1,39 @@ +# Summary Numbers. +raw total sequences: 200 +filtered sequences: 0 +sequences: 200 +is sorted: 1 +1st fragments: 100 +last fragments: 100 +reads mapped: 25 +reads mapped and paired: 0 # paired-end technology bit set + both mates mapped +reads unmapped: 175 +reads properly paired: 0 # proper-pair bit set +reads paired: 200 # paired-end technology bit set +reads duplicated: 0 # PCR or optical duplicate bit set +reads MQ0: 6 # mapped and MQ=0 +reads QC failed: 0 +non-primary alignments: 0 +total length: 50200 # ignores clipping +total first fragment length: 25100 # ignores clipping +total last fragment length: 25100 # ignores clipping +bases mapped: 6275 # ignores clipping +bases mapped (cigar): 6275 # more accurate +bases trimmed: 0 +bases duplicated: 0 +mismatches: 591 # from NM fields +error rate: 9.418327e-02 # mismatches / bases mapped (cigar) +average length: 251 +average first fragment length: 251 +average last fragment length: 251 +maximum length: 251 +maximum first fragment length: 251 +maximum last fragment length: 251 +average quality: 34.7 +insert size average: 0.0 +insert size standard deviation: 0.0 +inward oriented pairs: 0 +outward oriented pairs: 0 +pairs with other orientation: 0 +pairs on different chromosomes: 0 +percentage of properly paired reads (%): 0.0