comparison test-data/12.3reads.overlap.expected @ 12:8fecc86e574a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c

11:a95f78faca04

# This file was produced by samtools stats (1.12+htslib-1.12) and can be plotted using plot-bamstats
# This file contains statistics for all reads.
# The command line was:  stats -t /tmp/tmp0r5zs075/files/6/5/e/dataset_65ea4e4d-a70d-4001-911d-9d81ff2829a6.dat -@ 0 infile
# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK	09f8b87f	140798ec	2b989f07
# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
SN	raw total sequences:	3	# excluding supplementary and secondary reads

RL	100	3
# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
FRL	100	1
# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
LRL	100	2
# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
ID	1	1	2
# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
IC	19	0	0	1	0
IC	92	0	0	1	0

12:8fecc86e574a

# This file was produced by samtools stats (1.20+htslib-1.20) and can be plotted using plot-bamstats
# This file contains statistics for all reads.
# The command line was:  stats -t /tmp/tmp5q_kwqc0/files/8/f/b/dataset_8fbfc56f-17f3-4728-895b-34544e586ee7.dat -@ 0 infile
# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK	09f8b87f	140798ec	2b989f07
# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
SN	raw total sequences:	3	# excluding supplementary and secondary reads

RL	100	3
# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
FRL	100	1
# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
LRL	100	2
# Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count
MAPQ	37	1
MAPQ	60	2
# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
ID	1	1	2
# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
IC	19	0	0	1	0
IC	92	0	0	1	0