Mercurial > repos > devteam > samtools_stats

comparison test-data/1.stats.expected @ 4:8d500e0e0dbe draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 70b38ebad0d0936f102e3e7cb70f1060347ea8c4
author iuc
date Thu, 27 Sep 2018 08:59:54 -0400
parents
children ab75c7ea49a5
comparison
equal deleted inserted replaced
3:45c568e7f1f9 4:8d500e0e0dbe
1 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities
2 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
3 CHK 1a1c1362 29c426ae 7bab45da
4 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
5 SN raw total sequences: 2
6 SN filtered sequences: 0
7 SN sequences: 2
8 SN is sorted: 1
9 SN 1st fragments: 1
10 SN last fragments: 1
11 SN reads mapped: 2
12 SN reads mapped and paired: 2 # paired-end technology bit set + both mates mapped
13 SN reads unmapped: 0
14 SN reads properly paired: 2 # proper-pair bit set
15 SN reads paired: 2 # paired-end technology bit set
16 SN reads duplicated: 0 # PCR or optical duplicate bit set
17 SN reads MQ0: 0 # mapped and MQ=0
18 SN reads QC failed: 0
19 SN non-primary alignments: 0
20 SN total length: 70 # ignores clipping
21 SN total first fragment length: 35 # ignores clipping
22 SN total last fragment length: 35 # ignores clipping
23 SN bases mapped: 70 # ignores clipping
24 SN bases mapped (cigar): 70 # more accurate
25 SN bases trimmed: 0
26 SN bases duplicated: 0
27 SN mismatches: 0 # from NM fields
28 SN error rate: 0.000000e+00 # mismatches / bases mapped (cigar)
29 SN average length: 35
30 SN average first fragment length: 35
31 SN average last fragment length: 35
32 SN maximum length: 35
33 SN maximum first fragment length: 35
34 SN maximum last fragment length: 35
35 SN average quality: 255.0
36 SN insert size average: 100.0
37 SN insert size standard deviation: 0.0
38 SN inward oriented pairs: 1
39 SN outward oriented pairs: 0
40 SN pairs with other orientation: 0
41 SN pairs on different chromosomes: 0
42 SN percentage of properly paired reads (%): 100.0
43 # First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
44 # Columns correspond to qualities and rows to cycles. First column is the cycle number.
45 FFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
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117 # Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part.
118 # Columns correspond to qualities, rows to cycles. First column is the cycle number, second
119 # is the number of N's and the rest is the number of mismatches
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133 MPC 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
134 MPC 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
135 MPC 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
136 MPC 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
137 MPC 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
138 MPC 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
139 MPC 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
140 MPC 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
141 MPC 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
142 MPC 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
143 MPC 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
144 MPC 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
145 MPC 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
146 MPC 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
147 MPC 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
148 MPC 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
149 MPC 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
150 MPC 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
151 MPC 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
152 MPC 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
153 MPC 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
154 MPC 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
155 MPC 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
156 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
157 GCF 28.39 0
158 GCF 58.29 1
159 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
160 GCL 21.36 0
161 GCL 43.97 1
162 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
163 GCC 1 0.00 0.00 50.00 50.00 0.00 0.00
164 GCC 2 0.00 0.00 50.00 50.00 0.00 0.00
165 GCC 3 50.00 0.00 50.00 0.00 0.00 0.00
166 GCC 4 0.00 50.00 50.00 0.00 0.00 0.00
167 GCC 5 50.00 0.00 50.00 0.00 0.00 0.00
168 GCC 6 0.00 0.00 50.00 50.00 0.00 0.00
169 GCC 7 50.00 0.00 50.00 0.00 0.00 0.00
170 GCC 8 50.00 0.00 0.00 50.00 0.00 0.00
171 GCC 9 0.00 100.00 0.00 0.00 0.00 0.00
172 GCC 10 50.00 50.00 0.00 0.00 0.00 0.00
173 GCC 11 0.00 0.00 0.00 100.00 0.00 0.00
174 GCC 12 50.00 50.00 0.00 0.00 0.00 0.00
175 GCC 13 0.00 0.00 50.00 50.00 0.00 0.00
176 GCC 14 50.00 0.00 0.00 50.00 0.00 0.00
177 GCC 15 50.00 0.00 0.00 50.00 0.00 0.00
178 GCC 16 100.00 0.00 0.00 0.00 0.00 0.00
179 GCC 17 0.00 50.00 0.00 50.00 0.00 0.00
180 GCC 18 0.00 100.00 0.00 0.00 0.00 0.00
181 GCC 19 0.00 50.00 50.00 0.00 0.00 0.00
182 GCC 20 50.00 0.00 50.00 0.00 0.00 0.00
183 GCC 21 0.00 50.00 50.00 0.00 0.00 0.00
184 GCC 22 0.00 0.00 50.00 50.00 0.00 0.00
185 GCC 23 0.00 0.00 0.00 100.00 0.00 0.00
186 GCC 24 0.00 0.00 50.00 50.00 0.00 0.00
187 GCC 25 0.00 0.00 50.00 50.00 0.00 0.00
188 GCC 26 0.00 50.00 50.00 0.00 0.00 0.00
189 GCC 27 100.00 0.00 0.00 0.00 0.00 0.00
190 GCC 28 50.00 0.00 50.00 0.00 0.00 0.00
191 GCC 29 0.00 0.00 50.00 50.00 0.00 0.00
192 GCC 30 50.00 50.00 0.00 0.00 0.00 0.00
193 GCC 31 0.00 100.00 0.00 0.00 0.00 0.00
194 GCC 32 0.00 50.00 50.00 0.00 0.00 0.00
195 GCC 33 50.00 0.00 0.00 50.00 0.00 0.00
196 GCC 34 50.00 0.00 50.00 0.00 0.00 0.00
197 GCC 35 0.00 0.00 50.00 50.00 0.00 0.00
198 # ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
199 FBC 1 0.00 0.00 0.00 100.00 0.00 0.00
200 FBC 2 0.00 0.00 100.00 0.00 0.00 0.00
201 FBC 3 0.00 0.00 100.00 0.00 0.00 0.00
202 FBC 4 0.00 0.00 100.00 0.00 0.00 0.00
203 FBC 5 0.00 0.00 100.00 0.00 0.00 0.00
204 FBC 6 0.00 0.00 0.00 100.00 0.00 0.00
205 FBC 7 0.00 0.00 100.00 0.00 0.00 0.00
206 FBC 8 0.00 0.00 0.00 100.00 0.00 0.00
207 FBC 9 0.00 100.00 0.00 0.00 0.00 0.00
208 FBC 10 100.00 0.00 0.00 0.00 0.00 0.00
209 FBC 11 0.00 0.00 0.00 100.00 0.00 0.00
210 FBC 12 100.00 0.00 0.00 0.00 0.00 0.00
211 FBC 13 0.00 0.00 100.00 0.00 0.00 0.00
212 FBC 14 0.00 0.00 0.00 100.00 0.00 0.00
213 FBC 15 100.00 0.00 0.00 0.00 0.00 0.00
214 FBC 16 100.00 0.00 0.00 0.00 0.00 0.00
215 FBC 17 0.00 0.00 0.00 100.00 0.00 0.00
216 FBC 18 0.00 100.00 0.00 0.00 0.00 0.00
217 FBC 19 0.00 100.00 0.00 0.00 0.00 0.00
218 FBC 20 0.00 0.00 100.00 0.00 0.00 0.00
219 FBC 21 0.00 0.00 100.00 0.00 0.00 0.00
220 FBC 22 0.00 0.00 0.00 100.00 0.00 0.00
221 FBC 23 0.00 0.00 0.00 100.00 0.00 0.00
222 FBC 24 0.00 0.00 100.00 0.00 0.00 0.00
223 FBC 25 0.00 0.00 100.00 0.00 0.00 0.00
224 FBC 26 0.00 0.00 100.00 0.00 0.00 0.00
225 FBC 27 100.00 0.00 0.00 0.00 0.00 0.00
226 FBC 28 0.00 0.00 100.00 0.00 0.00 0.00
227 FBC 29 0.00 0.00 0.00 100.00 0.00 0.00
228 FBC 30 0.00 100.00 0.00 0.00 0.00 0.00
229 FBC 31 0.00 100.00 0.00 0.00 0.00 0.00
230 FBC 32 0.00 0.00 100.00 0.00 0.00 0.00
231 FBC 33 100.00 0.00 0.00 0.00 0.00 0.00
232 FBC 34 0.00 0.00 100.00 0.00 0.00 0.00
233 FBC 35 0.00 0.00 100.00 0.00 0.00 0.00
234 # ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
235 LBC 1 0.00 0.00 100.00 0.00 0.00 0.00
236 LBC 2 0.00 0.00 0.00 100.00 0.00 0.00
237 LBC 3 100.00 0.00 0.00 0.00 0.00 0.00
238 LBC 4 0.00 100.00 0.00 0.00 0.00 0.00
239 LBC 5 100.00 0.00 0.00 0.00 0.00 0.00
240 LBC 6 0.00 0.00 100.00 0.00 0.00 0.00
241 LBC 7 100.00 0.00 0.00 0.00 0.00 0.00
242 LBC 8 100.00 0.00 0.00 0.00 0.00 0.00
243 LBC 9 0.00 100.00 0.00 0.00 0.00 0.00
244 LBC 10 0.00 100.00 0.00 0.00 0.00 0.00
245 LBC 11 0.00 0.00 0.00 100.00 0.00 0.00
246 LBC 12 0.00 100.00 0.00 0.00 0.00 0.00
247 LBC 13 0.00 0.00 0.00 100.00 0.00 0.00
248 LBC 14 100.00 0.00 0.00 0.00 0.00 0.00
249 LBC 15 0.00 0.00 0.00 100.00 0.00 0.00
250 LBC 16 100.00 0.00 0.00 0.00 0.00 0.00
251 LBC 17 0.00 100.00 0.00 0.00 0.00 0.00
252 LBC 18 0.00 100.00 0.00 0.00 0.00 0.00
253 LBC 19 0.00 0.00 100.00 0.00 0.00 0.00
254 LBC 20 100.00 0.00 0.00 0.00 0.00 0.00
255 LBC 21 0.00 100.00 0.00 0.00 0.00 0.00
256 LBC 22 0.00 0.00 100.00 0.00 0.00 0.00
257 LBC 23 0.00 0.00 0.00 100.00 0.00 0.00
258 LBC 24 0.00 0.00 0.00 100.00 0.00 0.00
259 LBC 25 0.00 0.00 0.00 100.00 0.00 0.00
260 LBC 26 0.00 100.00 0.00 0.00 0.00 0.00
261 LBC 27 100.00 0.00 0.00 0.00 0.00 0.00
262 LBC 28 100.00 0.00 0.00 0.00 0.00 0.00
263 LBC 29 0.00 0.00 100.00 0.00 0.00 0.00
264 LBC 30 100.00 0.00 0.00 0.00 0.00 0.00
265 LBC 31 0.00 100.00 0.00 0.00 0.00 0.00
266 LBC 32 0.00 100.00 0.00 0.00 0.00 0.00
267 LBC 33 0.00 0.00 0.00 100.00 0.00 0.00
268 LBC 34 100.00 0.00 0.00 0.00 0.00 0.00
269 LBC 35 0.00 0.00 0.00 100.00 0.00 0.00
270 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
271 IS 0 0 0 0 0
272 IS 1 0 0 0 0
273 IS 2 0 0 0 0
274 IS 3 0 0 0 0
275 IS 4 0 0 0 0
276 IS 5 0 0 0 0
277 IS 6 0 0 0 0
278 IS 7 0 0 0 0
279 IS 8 0 0 0 0
280 IS 9 0 0 0 0
281 IS 10 0 0 0 0
282 IS 11 0 0 0 0
283 IS 12 0 0 0 0
284 IS 13 0 0 0 0
285 IS 14 0 0 0 0
286 IS 15 0 0 0 0
287 IS 16 0 0 0 0
288 IS 17 0 0 0 0
289 IS 18 0 0 0 0
290 IS 19 0 0 0 0
291 IS 20 0 0 0 0
292 IS 21 0 0 0 0
293 IS 22 0 0 0 0
294 IS 23 0 0 0 0
295 IS 24 0 0 0 0
296 IS 25 0 0 0 0
297 IS 26 0 0 0 0
298 IS 27 0 0 0 0
299 IS 28 0 0 0 0
300 IS 29 0 0 0 0
301 IS 30 0 0 0 0
302 IS 31 0 0 0 0
303 IS 32 0 0 0 0
304 IS 33 0 0 0 0
305 IS 34 0 0 0 0
306 IS 35 0 0 0 0
307 IS 36 0 0 0 0
308 IS 37 0 0 0 0
309 IS 38 0 0 0 0
310 IS 39 0 0 0 0
311 IS 40 0 0 0 0
312 IS 41 0 0 0 0
313 IS 42 0 0 0 0
314 IS 43 0 0 0 0
315 IS 44 0 0 0 0
316 IS 45 0 0 0 0
317 IS 46 0 0 0 0
318 IS 47 0 0 0 0
319 IS 48 0 0 0 0
320 IS 49 0 0 0 0
321 IS 50 0 0 0 0
322 IS 51 0 0 0 0
323 IS 52 0 0 0 0
324 IS 53 0 0 0 0
325 IS 54 0 0 0 0
326 IS 55 0 0 0 0
327 IS 56 0 0 0 0
328 IS 57 0 0 0 0
329 IS 58 0 0 0 0
330 IS 59 0 0 0 0
331 IS 60 0 0 0 0
332 IS 61 0 0 0 0
333 IS 62 0 0 0 0
334 IS 63 0 0 0 0
335 IS 64 0 0 0 0
336 IS 65 0 0 0 0
337 IS 66 0 0 0 0
338 IS 67 0 0 0 0
339 IS 68 0 0 0 0
340 IS 69 0 0 0 0
341 IS 70 0 0 0 0
342 IS 71 0 0 0 0
343 IS 72 0 0 0 0
344 IS 73 0 0 0 0
345 IS 74 0 0 0 0
346 IS 75 0 0 0 0
347 IS 76 0 0 0 0
348 IS 77 0 0 0 0
349 IS 78 0 0 0 0
350 IS 79 0 0 0 0
351 IS 80 0 0 0 0
352 IS 81 0 0 0 0
353 IS 82 0 0 0 0
354 IS 83 0 0 0 0
355 IS 84 0 0 0 0
356 IS 85 0 0 0 0
357 IS 86 0 0 0 0
358 IS 87 0 0 0 0
359 IS 88 0 0 0 0
360 IS 89 0 0 0 0
361 IS 90 0 0 0 0
362 IS 91 0 0 0 0
363 IS 92 0 0 0 0
364 IS 93 0 0 0 0
365 IS 94 0 0 0 0
366 IS 95 0 0 0 0
367 IS 96 0 0 0 0
368 IS 97 0 0 0 0
369 IS 98 0 0 0 0
370 IS 99 0 0 0 0
371 IS 100 1 1 0 0
372 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
373 RL 35 2
374 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
375 FRL 35 1
376 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
377 LRL 35 1
378 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
379 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
380 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
381 COV [1-1] 1 70
382 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
383 GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000