# HG changeset patch
# User iuc
# Date 1494342989 14400
# Node ID ac469d103b51a7b1964fb2c1c7b3f80019dce651
# Parent 51390195d35011dfe75c300b48b74037b72fe342
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_split commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
diff -r 51390195d350 -r ac469d103b51 macros.xml
--- a/macros.xml Fri Dec 18 19:46:52 2015 -0500
+++ b/macros.xml Tue May 09 11:16:29 2017 -0400
@@ -1,16 +1,17 @@
- samtools
+ samtools
+ 1.3.1
@misc{SAM_def,
title={Definition of SAM/BAM format},
- url = {https://samtools.github.io/hts-specs/SAMv1.pdf},}
+ url = {https://samtools.github.io/hts-specs/},}
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btr076
@@ -41,7 +42,7 @@
- echo $(samtools --version | head -n 1)", "$(samtools --version | grep -o -E "htslib.*?")
+ &1 | grep Version]]>
@@ -64,7 +65,5 @@
5. Click **Save**
The medatada will be re-detected and you will be able to see the list of reference sequences in the "**Select references (chromosomes and contigs) you would like to restrict bam to**" drop-down.
-
-
diff -r 51390195d350 -r ac469d103b51 samtools_split.xml
--- a/samtools_split.xml Fri Dec 18 19:46:52 2015 -0500
+++ b/samtools_split.xml Tue May 09 11:16:29 2017 -0400
@@ -1,26 +1,26 @@
-
+
BAM dataset on readgroups
macros.xml
-
-
-
+
+
+
+ ]]>
-
+
-
+
@@ -34,14 +34,12 @@
-
+
-
+This tool is based on ``samtools split`` command. It will generate multiple output datasets for each redagroup from the input dataset.
+ ]]>
+
-
diff -r 51390195d350 -r ac469d103b51 tool_dependencies.xml
--- a/tool_dependencies.xml Fri Dec 18 19:46:52 2015 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-
-
-
-
-
-