# HG changeset patch # User iuc # Date 1494342989 14400 # Node ID ac469d103b51a7b1964fb2c1c7b3f80019dce651 # Parent 51390195d35011dfe75c300b48b74037b72fe342 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_split commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40 diff -r 51390195d350 -r ac469d103b51 macros.xml --- a/macros.xml Fri Dec 18 19:46:52 2015 -0500 +++ b/macros.xml Tue May 09 11:16:29 2017 -0400 @@ -1,16 +1,17 @@ - samtools + samtools + 1.3.1 @misc{SAM_def, title={Definition of SAM/BAM format}, - url = {https://samtools.github.io/hts-specs/SAMv1.pdf},} + url = {https://samtools.github.io/hts-specs/},} 10.1093/bioinformatics/btp352 10.1093/bioinformatics/btr076 @@ -41,7 +42,7 @@ - echo $(samtools --version | head -n 1)", "$(samtools --version | grep -o -E "htslib.*?") + &1 | grep Version]]> @@ -64,7 +65,5 @@ 5. Click **Save** The medatada will be re-detected and you will be able to see the list of reference sequences in the "**Select references (chromosomes and contigs) you would like to restrict bam to**" drop-down. - - diff -r 51390195d350 -r ac469d103b51 samtools_split.xml --- a/samtools_split.xml Fri Dec 18 19:46:52 2015 -0500 +++ b/samtools_split.xml Tue May 09 11:16:29 2017 -0400 @@ -1,26 +1,26 @@ - + BAM dataset on readgroups macros.xml - - - + + + + ]]> - + - + @@ -34,14 +34,12 @@ - + - +This tool is based on ``samtools split`` command. It will generate multiple output datasets for each redagroup from the input dataset. + ]]> + - diff -r 51390195d350 -r ac469d103b51 tool_dependencies.xml --- a/tool_dependencies.xml Fri Dec 18 19:46:52 2015 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ - - - - - -