# HG changeset patch
# User devteam
# Date 1414182136 14400
# Node ID 5c2a97bb018be23e371de5df0dfc9e4fc50024a7
Uploaded initial tool definition.
diff -r 000000000000 -r 5c2a97bb018b samtools_split.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_split.xml Fri Oct 24 16:22:16 2014 -0400
@@ -0,0 +1,53 @@
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+ a BAM file by read group
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+ samtools
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+ samtools --version | head -n 1 | awk '{ print $2 }'
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+**What it does**
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+This tool runs the ``samtools split`` command in the SAMtools toolkit.
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+Split BAM files by read group.
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+**Citation**
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+For the underlying tool, please cite `Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. <http://www.ncbi.nlm.nih.gov/pubmed/19505943>`_
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+If you use this tool in Galaxy, please cite Blankenberg D, et al. *In preparation.*
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diff -r 000000000000 -r 5c2a97bb018b test-data/phiX.bam
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diff -r 000000000000 -r 5c2a97bb018b test-data/phiX_Elephant.bam
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diff -r 000000000000 -r 5c2a97bb018b test-data/phiX_Human.bam
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diff -r 000000000000 -r 5c2a97bb018b test-data/samtools_split_out.bam
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diff -r 000000000000 -r 5c2a97bb018b test-data/tmpV04boNsamtools_split_out.bam
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diff -r 000000000000 -r 5c2a97bb018b tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Fri Oct 24 16:22:16 2014 -0400
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