comparison test-data/1.bam @ 0:4cafbe1d2ea6

initial commit
author martenson <cech.marten@gmail.com>
date Wed, 10 Sep 2014 23:06:15 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:4cafbe1d2ea6
1
2
3
4
5 <!DOCTYPE html>
6 <html lang="en" class="">
7 <head prefix="og: http://ogp.me/ns# fb: http://ogp.me/ns/fb# object: http://ogp.me/ns/object# article: http://ogp.me/ns/article# profile: http://ogp.me/ns/profile#">
8 <meta charset='utf-8'>
9 <meta http-equiv="X-UA-Compatible" content="IE=edge">
10 <meta http-equiv="Content-Language" content="en">
11
12
13 <title>galaxytools/1.bam at master ยท bgruening/galaxytools</title>
14 <link rel="search" type="application/opensearchdescription+xml" href="/opensearch.xml" title="GitHub">
15 <link rel="fluid-icon" href="https://github.com/fluidicon.png" title="GitHub">
16 <link rel="apple-touch-icon" sizes="57x57" href="/apple-touch-icon-114.png">
17 <link rel="apple-touch-icon" sizes="114x114" href="/apple-touch-icon-114.png">
18 <link rel="apple-touch-icon" sizes="72x72" href="/apple-touch-icon-144.png">
19 <link rel="apple-touch-icon" sizes="144x144" href="/apple-touch-icon-144.png">
20 <meta property="fb:app_id" content="1401488693436528">
21
22 <meta content="@github" name="twitter:site" /><meta content="summary" name="twitter:card" /><meta content="bgruening/galaxytools" name="twitter:title" /><meta content="galaxytools - Galaxy Tool wrappers" name="twitter:description" /><meta content="https://avatars0.githubusercontent.com/u/469983?v=2&amp;s=400" name="twitter:image:src" />
23 <meta content="GitHub" property="og:site_name" /><meta content="object" property="og:type" /><meta content="https://avatars0.githubusercontent.com/u/469983?v=2&amp;s=400" property="og:image" /><meta content="bgruening/galaxytools" property="og:title" /><meta content="https://github.com/bgruening/galaxytools" property="og:url" /><meta content="galaxytools - Galaxy Tool wrappers" property="og:description" />
24
25 <meta name="browser-stats-url" content="/_stats">
26 <link rel="assets" href="https://assets-cdn.github.com/">
27 <link rel="conduit-xhr" href="https://ghconduit.com:25035">
28 <link rel="xhr-socket" href="/_sockets">
29
30 <meta name="msapplication-TileImage" content="/windows-tile.png">
31 <meta name="msapplication-TileColor" content="#ffffff">
32 <meta name="selected-link" value="repo_source" data-pjax-transient>
33 <meta name="google-analytics" content="UA-3769691-2">
34
35 <meta content="collector.githubapp.com" name="octolytics-host" /><meta content="collector-cdn.github.com" name="octolytics-script-host" /><meta content="github" name="octolytics-app-id" /><meta content="473A4A01:275A:168FAE8:54111161" name="octolytics-dimension-request_id" /><meta content="1814954" name="octolytics-actor-id" /><meta content="martenson" name="octolytics-actor-login" /><meta content="dde9ac06cabe96d1758902d5ea67b8d45f8cc402318d8a310a5cb1697f328405" name="octolytics-actor-hash" />
36 <meta content="Rails, view, blob#show" name="analytics-event" />
37
38
39
40 <link rel="icon" type="image/x-icon" href="https://assets-cdn.github.com/favicon.ico">
41
42
43 <meta content="authenticity_token" name="csrf-param" />
44 <meta content="e/po+/l13qw1RdQD44fDo8VJsj5g7HrHRh/+1Ue13oiFwRxWUSk4gscJlnrn41ZbA3IejErxP31Q5EljuVTHXQ==" name="csrf-token" />
45
46 <link href="https://assets-cdn.github.com/assets/github-e98a2e283e3419aa85768affc5929842870bc5fc.css" media="all" rel="stylesheet" type="text/css" />
47 <link href="https://assets-cdn.github.com/assets/github2-c63e67d784fa7ee064d9610f2d22cdf8d0d7f467.css" media="all" rel="stylesheet" type="text/css" />
48
49
50
51 <meta http-equiv="x-pjax-version" content="37f365d9c8bc52a9b54820d2549e77db">
52
53
54 <meta name="description" content="galaxytools - Galaxy Tool wrappers">
55 <meta name="go-import" content="github.com/bgruening/galaxytools git https://github.com/bgruening/galaxytools.git">
56
57 <meta content="469983" name="octolytics-dimension-user_id" /><meta content="bgruening" name="octolytics-dimension-user_login" /><meta content="6942323" name="octolytics-dimension-repository_id" /><meta content="bgruening/galaxytools" name="octolytics-dimension-repository_nwo" /><meta content="true" name="octolytics-dimension-repository_public" /><meta content="false" name="octolytics-dimension-repository_is_fork" /><meta content="6942323" name="octolytics-dimension-repository_network_root_id" /><meta content="bgruening/galaxytools" name="octolytics-dimension-repository_network_root_nwo" />
58 <link href="https://github.com/bgruening/galaxytools/commits/master.atom" rel="alternate" title="Recent Commits to galaxytools:master" type="application/atom+xml">
59
60 </head>
61
62
63 <body class="logged_in env-production macintosh vis-public page-blob">
64 <a href="#start-of-content" tabindex="1" class="accessibility-aid js-skip-to-content">Skip to content</a>
65 <div class="wrapper">
66
67
68
69
70
71
72 <div class="header header-logged-in true">
73 <div class="container clearfix">
74
75 <a class="header-logo-invertocat" href="https://github.com/" aria-label="Homepage" ga-data-click="Header, go to dashboard, icon:logo">
76 <span class="mega-octicon octicon-mark-github"></span>
77 </a>
78
79
80 <div class="site-search repo-scope js-site-search">
81 <form accept-charset="UTF-8" action="/bgruening/galaxytools/search" class="js-site-search-form" data-global-search-url="/search" data-repo-search-url="/bgruening/galaxytools/search" method="get"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /></div>
82 <input type="text"
83 class="js-site-search-field is-clearable"
84 data-hotkey="s"
85 name="q"
86 placeholder="Search"
87 data-global-scope-placeholder="Search GitHub"
88 data-repo-scope-placeholder="Search"
89 tabindex="1"
90 autocapitalize="off">
91 <div class="scope-badge">This repository</div>
92 </form>
93 </div>
94 <ul class="header-nav left">
95 <li class="header-nav-item explore">
96 <a class="header-nav-link" href="/explore" data-ga-click="Header, go to explore, text:explore">Explore</a>
97 </li>
98 <li class="header-nav-item">
99 <a class="header-nav-link" href="https://gist.github.com" data-ga-click="Header, go to gist, text:gist">Gist</a>
100 </li>
101 <li class="header-nav-item">
102 <a class="header-nav-link" href="/blog" data-ga-click="Header, go to blog, text:blog">Blog</a>
103 </li>
104 <li class="header-nav-item">
105 <a class="header-nav-link" href="https://help.github.com" data-ga-click="Header, go to help, text:help">Help</a>
106 </li>
107 </ul>
108
109
110 <ul class="header-nav user-nav right" id="user-links">
111 <li class="header-nav-item dropdown js-menu-container">
112 <a class="header-nav-link name" href="/martenson" data-ga-click="Header, go to profile, text:username">
113 <img alt="Marten" class="avatar" data-user="1814954" height="20" src="https://avatars1.githubusercontent.com/u/1814954?v=2&amp;s=40" width="20" />
114 <span class="css-truncate">
115 <span class="css-truncate-target">martenson</span>
116 </span>
117 </a>
118 </li>
119
120 <li class="header-nav-item dropdown js-menu-container">
121 <a class="header-nav-link js-menu-target tooltipped tooltipped-s" href="#" aria-label="Create new..." data-ga-click="Header, create new, icon:add">
122 <span class="octicon octicon-plus"></span>
123 <span class="dropdown-caret"></span>
124 </a>
125
126 <div class="dropdown-menu-content js-menu-content">
127
128 <ul class="dropdown-menu">
129 <li>
130 <a href="/new"><span class="octicon octicon-repo"></span> New repository</a>
131 </li>
132 <li>
133 <a href="/organizations/new"><span class="octicon octicon-organization"></span> New organization</a>
134 </li>
135
136
137 <li class="dropdown-divider"></li>
138 <li class="dropdown-header">
139 <span title="bgruening/galaxytools">This repository</span>
140 </li>
141 <li>
142 <a href="/bgruening/galaxytools/issues/new"><span class="octicon octicon-issue-opened"></span> New issue</a>
143 </li>
144 </ul>
145
146 </div>
147 </li>
148
149 <li class="header-nav-item">
150 <a href="/notifications" aria-label="You have no unread notifications" class="header-nav-link notification-indicator tooltipped tooltipped-s" data-ga-click="Header, go to notifications, icon:read" data-hotkey="g n">
151 <span class="mail-status all-read"></span>
152 <span class="octicon octicon-inbox"></span>
153 </a>
154 </li>
155
156 <li class="header-nav-item">
157 <a class="header-nav-link tooltipped tooltipped-s" href="/settings/profile" id="account_settings" aria-label="Settings" data-ga-click="Header, go to settings, icon:settings">
158 <span class="octicon octicon-gear"></span>
159 </a>
160 </li>
161
162 <li class="header-nav-item">
163 <form accept-charset="UTF-8" action="/logout" class="logout-form" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="NzkdsDLfeT4a64PQx4j3B7Sf5GGdO8VeIcXWwQSlOlPaB2GjHeph/uYMpoTfZ8ab3QNJLIROIevfBAbM9RgttA==" /></div>
164 <button class="header-nav-link sign-out-button tooltipped tooltipped-s" aria-label="Sign out" data-ga-click="Header, sign out, icon:logout">
165 <span class="octicon octicon-sign-out"></span>
166 </button>
167 </form> </li>
168
169 </ul>
170
171
172
173 </div>
174 </div>
175
176
177
178
179
180
181 <div id="start-of-content" class="accessibility-aid"></div>
182 <div class="site" itemscope itemtype="http://schema.org/WebPage">
183 <div id="js-flash-container">
184
185 </div>
186 <div class="pagehead repohead instapaper_ignore readability-menu">
187 <div class="container">
188
189 <ul class="pagehead-actions">
190
191 <li class="subscription">
192 <form accept-charset="UTF-8" action="/notifications/subscribe" class="js-social-container" data-autosubmit="true" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="02SnxhR2K3xw3On7N4Xa5X6FecQsLPBr/ebUTSWXG4bJZ4F2Qdt07Fcx1omyGSVHJWkSf1kDEk66MeMk+vv09g==" /></div> <input id="repository_id" name="repository_id" type="hidden" value="6942323" />
193
194 <div class="select-menu js-menu-container js-select-menu">
195 <a class="social-count js-social-count" href="/bgruening/galaxytools/watchers">
196 18
197 </a>
198 <a href="/bgruening/galaxytools/subscription"
199 class="minibutton select-menu-button with-count js-menu-target" role="button" tabindex="0" aria-haspopup="true">
200 <span class="js-select-button">
201 <span class="octicon octicon-eye"></span>
202 Watch
203 </span>
204 </a>
205
206 <div class="select-menu-modal-holder">
207 <div class="select-menu-modal subscription-menu-modal js-menu-content" aria-hidden="true">
208 <div class="select-menu-header">
209 <span class="select-menu-title">Notifications</span>
210 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span>
211 </div> <!-- /.select-menu-header -->
212
213 <div class="select-menu-list js-navigation-container" role="menu">
214
215 <div class="select-menu-item js-navigation-item selected" role="menuitem" tabindex="0">
216 <span class="select-menu-item-icon octicon octicon-check"></span>
217 <div class="select-menu-item-text">
218 <input checked="checked" id="do_included" name="do" type="radio" value="included" />
219 <h4>Not watching</h4>
220 <span class="description">Be notified when participating or @mentioned.</span>
221 <span class="js-select-button-text hidden-select-button-text">
222 <span class="octicon octicon-eye"></span>
223 Watch
224 </span>
225 </div>
226 </div> <!-- /.select-menu-item -->
227
228 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0">
229 <span class="select-menu-item-icon octicon octicon octicon-check"></span>
230 <div class="select-menu-item-text">
231 <input id="do_subscribed" name="do" type="radio" value="subscribed" />
232 <h4>Watching</h4>
233 <span class="description">Be notified of all conversations.</span>
234 <span class="js-select-button-text hidden-select-button-text">
235 <span class="octicon octicon-eye"></span>
236 Unwatch
237 </span>
238 </div>
239 </div> <!-- /.select-menu-item -->
240
241 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0">
242 <span class="select-menu-item-icon octicon octicon-check"></span>
243 <div class="select-menu-item-text">
244 <input id="do_ignore" name="do" type="radio" value="ignore" />
245 <h4>Ignoring</h4>
246 <span class="description">Never be notified.</span>
247 <span class="js-select-button-text hidden-select-button-text">
248 <span class="octicon octicon-mute"></span>
249 Stop ignoring
250 </span>
251 </div>
252 </div> <!-- /.select-menu-item -->
253
254 </div> <!-- /.select-menu-list -->
255
256 </div> <!-- /.select-menu-modal -->
257 </div> <!-- /.select-menu-modal-holder -->
258 </div> <!-- /.select-menu -->
259
260 </form>
261 </li>
262
263 <li>
264
265 <div class="js-toggler-container js-social-container starring-container on">
266
267 <form accept-charset="UTF-8" action="/bgruening/galaxytools/unstar" class="js-toggler-form starred js-unstar-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="OkB8VOG5D9GOuAv/3N5ACw0Wbx6boPWGp7v0UXxJz6mvRDAUxHp/F+wjWiLvOIYpbwfuIiVzQj9zeTVprn+dFw==" /></div>
268 <button
269 class="minibutton with-count js-toggler-target star-button"
270 aria-label="Unstar this repository" title="Unstar bgruening/galaxytools">
271 <span class="octicon octicon-star"></span>
272 Unstar
273 </button>
274 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers">
275 20
276 </a>
277 </form>
278 <form accept-charset="UTF-8" action="/bgruening/galaxytools/star" class="js-toggler-form unstarred js-star-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="tLiPR01TBugEEpxrmnGopJk4XCODnKU/26yQ5fZQm5Kb8B5d4c0VaCTo7cgusG/nL82E3fnhStUCP+2He4bsJQ==" /></div>
279 <button
280 class="minibutton with-count js-toggler-target star-button"
281 aria-label="Star this repository" title="Star bgruening/galaxytools">
282 <span class="octicon octicon-star"></span>
283 Star
284 </button>
285 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers">
286 20
287 </a>
288 </form> </div>
289
290 </li>
291
292
293 <li>
294 <a href="/bgruening/galaxytools/fork" class="minibutton with-count js-toggler-target fork-button tooltipped-n" title="Fork your own copy of bgruening/galaxytools to your account" aria-label="Fork your own copy of bgruening/galaxytools to your account" rel="nofollow" data-method="post">
295 <span class="octicon octicon-repo-forked"></span>
296 Fork
297 </a>
298 <a href="/bgruening/galaxytools/network" class="social-count">22</a>
299 </li>
300
301 </ul>
302
303 <h1 itemscope itemtype="http://data-vocabulary.org/Breadcrumb" class="entry-title public">
304 <span class="mega-octicon octicon-repo"></span>
305 <span class="author"><a href="/bgruening" class="url fn" itemprop="url" rel="author"><span itemprop="title">bgruening</span></a></span><!--
306 --><span class="path-divider">/</span><!--
307 --><strong><a href="/bgruening/galaxytools" class="js-current-repository js-repo-home-link">galaxytools</a></strong>
308
309 <span class="page-context-loader">
310 <img alt="" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
311 </span>
312
313 </h1>
314 </div><!-- /.container -->
315 </div><!-- /.repohead -->
316
317 <div class="container">
318 <div class="repository-with-sidebar repo-container new-discussion-timeline ">
319 <div class="repository-sidebar clearfix">
320
321 <div class="sunken-menu vertical-right repo-nav js-repo-nav js-repository-container-pjax js-octicon-loaders" data-issue-count-url="/bgruening/galaxytools/issues/counts">
322 <div class="sunken-menu-contents">
323 <ul class="sunken-menu-group">
324 <li class="tooltipped tooltipped-w" aria-label="Code">
325 <a href="/bgruening/galaxytools" aria-label="Code" class="selected js-selected-navigation-item sunken-menu-item" data-hotkey="g c" data-pjax="true" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches /bgruening/galaxytools">
326 <span class="octicon octicon-code"></span> <span class="full-word">Code</span>
327 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
328 </a> </li>
329
330 <li class="tooltipped tooltipped-w" aria-label="Issues">
331 <a href="/bgruening/galaxytools/issues" aria-label="Issues" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g i" data-selected-links="repo_issues repo_labels repo_milestones /bgruening/galaxytools/issues">
332 <span class="octicon octicon-issue-opened"></span> <span class="full-word">Issues</span>
333 <span class="js-issue-replace-counter"></span>
334 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
335 </a> </li>
336
337 <li class="tooltipped tooltipped-w" aria-label="Pull Requests">
338 <a href="/bgruening/galaxytools/pulls" aria-label="Pull Requests" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g p" data-selected-links="repo_pulls /bgruening/galaxytools/pulls">
339 <span class="octicon octicon-git-pull-request"></span> <span class="full-word">Pull Requests</span>
340 <span class="js-pull-replace-counter"></span>
341 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
342 </a> </li>
343
344
345 <li class="tooltipped tooltipped-w" aria-label="Wiki">
346 <a href="/bgruening/galaxytools/wiki" aria-label="Wiki" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g w" data-selected-links="repo_wiki /bgruening/galaxytools/wiki">
347 <span class="octicon octicon-book"></span> <span class="full-word">Wiki</span>
348 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
349 </a> </li>
350 </ul>
351 <div class="sunken-menu-separator"></div>
352 <ul class="sunken-menu-group">
353
354 <li class="tooltipped tooltipped-w" aria-label="Pulse">
355 <a href="/bgruening/galaxytools/pulse/weekly" aria-label="Pulse" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="pulse /bgruening/galaxytools/pulse/weekly">
356 <span class="octicon octicon-pulse"></span> <span class="full-word">Pulse</span>
357 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
358 </a> </li>
359
360 <li class="tooltipped tooltipped-w" aria-label="Graphs">
361 <a href="/bgruening/galaxytools/graphs" aria-label="Graphs" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="repo_graphs repo_contributors /bgruening/galaxytools/graphs">
362 <span class="octicon octicon-graph"></span> <span class="full-word">Graphs</span>
363 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
364 </a> </li>
365 </ul>
366
367
368 </div>
369 </div>
370
371 <div class="only-with-full-nav">
372
373
374 <div class="clone-url open"
375 data-protocol-type="http"
376 data-url="/users/set_protocol?protocol_selector=http&amp;protocol_type=clone">
377 <h3><span class="text-emphasized">HTTPS</span> clone URL</h3>
378 <div class="input-group">
379 <input type="text" class="input-mini input-monospace js-url-field"
380 value="https://github.com/bgruening/galaxytools.git" readonly="readonly">
381 <span class="input-group-button">
382 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools.git" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
383 </span>
384 </div>
385 </div>
386
387
388 <div class="clone-url "
389 data-protocol-type="ssh"
390 data-url="/users/set_protocol?protocol_selector=ssh&amp;protocol_type=clone">
391 <h3><span class="text-emphasized">SSH</span> clone URL</h3>
392 <div class="input-group">
393 <input type="text" class="input-mini input-monospace js-url-field"
394 value="git@github.com:bgruening/galaxytools.git" readonly="readonly">
395 <span class="input-group-button">
396 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="git@github.com:bgruening/galaxytools.git" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
397 </span>
398 </div>
399 </div>
400
401
402 <div class="clone-url "
403 data-protocol-type="subversion"
404 data-url="/users/set_protocol?protocol_selector=subversion&amp;protocol_type=clone">
405 <h3><span class="text-emphasized">Subversion</span> checkout URL</h3>
406 <div class="input-group">
407 <input type="text" class="input-mini input-monospace js-url-field"
408 value="https://github.com/bgruening/galaxytools" readonly="readonly">
409 <span class="input-group-button">
410 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
411 </span>
412 </div>
413 </div>
414
415
416 <p class="clone-options">You can clone with
417 <a href="#" class="js-clone-selector" data-protocol="http">HTTPS</a>,
418 <a href="#" class="js-clone-selector" data-protocol="ssh">SSH</a>,
419 or <a href="#" class="js-clone-selector" data-protocol="subversion">Subversion</a>.
420 <a href="https://help.github.com/articles/which-remote-url-should-i-use" class="help tooltipped tooltipped-n" aria-label="Get help on which URL is right for you.">
421 <span class="octicon octicon-question"></span>
422 </a>
423 </p>
424
425 <a href="http://mac.github.com" data-url="github-mac://openRepo/https://github.com/bgruening/galaxytools" class="minibutton sidebar-button js-conduit-rewrite-url" title="Save bgruening/galaxytools to your computer and use it in GitHub Desktop." aria-label="Save bgruening/galaxytools to your computer and use it in GitHub Desktop.">
426 <span class="octicon octicon-device-desktop"></span>
427 Clone in Desktop
428 </a>
429
430
431 <a href="/bgruening/galaxytools/archive/master.zip"
432 class="minibutton sidebar-button"
433 aria-label="Download the contents of bgruening/galaxytools as a zip file"
434 title="Download the contents of bgruening/galaxytools as a zip file"
435 rel="nofollow">
436 <span class="octicon octicon-cloud-download"></span>
437 Download ZIP
438 </a>
439 </div>
440 </div><!-- /.repository-sidebar -->
441
442 <div id="js-repo-pjax-container" class="repository-content context-loader-container" data-pjax-container>
443
444
445 <a href="/bgruening/galaxytools/blob/3a57ada6062aa513010b1bc15048135d4207f337/samtools_sort/test-data/1.bam" class="hidden js-permalink-shortcut" data-hotkey="y">Permalink</a>
446
447 <!-- blob contrib key: blob_contributors:v21:b875a89b8ed1c27a7d5bd3948ea3ea2e -->
448
449 <div class="file-navigation">
450
451 <div class="select-menu js-menu-container js-select-menu left">
452 <span class="minibutton select-menu-button js-menu-target css-truncate" data-hotkey="w"
453 data-master-branch="master"
454 data-ref="master"
455 title="master"
456 role="button" aria-label="Switch branches or tags" tabindex="0" aria-haspopup="true">
457 <span class="octicon octicon-git-branch"></span>
458 <i>branch:</i>
459 <span class="js-select-button css-truncate-target">master</span>
460 </span>
461
462 <div class="select-menu-modal-holder js-menu-content js-navigation-container" data-pjax aria-hidden="true">
463
464 <div class="select-menu-modal">
465 <div class="select-menu-header">
466 <span class="select-menu-title">Switch branches/tags</span>
467 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span>
468 </div> <!-- /.select-menu-header -->
469
470 <div class="select-menu-filters">
471 <div class="select-menu-text-filter">
472 <input type="text" aria-label="Filter branches/tags" id="context-commitish-filter-field" class="js-filterable-field js-navigation-enable" placeholder="Filter branches/tags">
473 </div>
474 <div class="select-menu-tabs">
475 <ul>
476 <li class="select-menu-tab">
477 <a href="#" data-tab-filter="branches" class="js-select-menu-tab">Branches</a>
478 </li>
479 <li class="select-menu-tab">
480 <a href="#" data-tab-filter="tags" class="js-select-menu-tab">Tags</a>
481 </li>
482 </ul>
483 </div><!-- /.select-menu-tabs -->
484 </div><!-- /.select-menu-filters -->
485
486 <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="branches">
487
488 <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring">
489
490
491 <div class="select-menu-item js-navigation-item ">
492 <span class="select-menu-item-icon octicon octicon-check"></span>
493 <a href="/bgruening/galaxytools/blob/gh-pages/samtools_sort/test-data/1.bam"
494 data-name="gh-pages"
495 data-skip-pjax="true"
496 rel="nofollow"
497 class="js-navigation-open select-menu-item-text css-truncate-target"
498 title="gh-pages">gh-pages</a>
499 </div> <!-- /.select-menu-item -->
500 <div class="select-menu-item js-navigation-item selected">
501 <span class="select-menu-item-icon octicon octicon-check"></span>
502 <a href="/bgruening/galaxytools/blob/master/samtools_sort/test-data/1.bam"
503 data-name="master"
504 data-skip-pjax="true"
505 rel="nofollow"
506 class="js-navigation-open select-menu-item-text css-truncate-target"
507 title="master">master</a>
508 </div> <!-- /.select-menu-item -->
509 </div>
510
511 <div class="select-menu-no-results">Nothing to show</div>
512 </div> <!-- /.select-menu-list -->
513
514 <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="tags">
515 <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring">
516
517
518 </div>
519
520 <div class="select-menu-no-results">Nothing to show</div>
521 </div> <!-- /.select-menu-list -->
522
523 </div> <!-- /.select-menu-modal -->
524 </div> <!-- /.select-menu-modal-holder -->
525 </div> <!-- /.select-menu -->
526
527 <div class="button-group right">
528 <a href="/bgruening/galaxytools/find/master"
529 class="js-show-file-finder minibutton empty-icon tooltipped tooltipped-s"
530 data-pjax
531 data-hotkey="t"
532 aria-label="Quickly jump between files">
533 <span class="octicon octicon-list-unordered"></span>
534 </a>
535 <button class="js-zeroclipboard minibutton zeroclipboard-button"
536 data-clipboard-text="samtools_sort/test-data/1.bam"
537 aria-label="Copy to clipboard"
538 data-copied-hint="Copied!">
539 <span class="octicon octicon-clippy"></span>
540 </button>
541 </div>
542
543 <div class="breadcrumb">
544 <span class='repo-root js-repo-root'><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">galaxytools</span></a></span></span><span class="separator"> / </span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools/tree/master/samtools_sort" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">samtools_sort</span></a></span><span class="separator"> / </span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools/tree/master/samtools_sort/test-data" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">test-data</span></a></span><span class="separator"> / </span><strong class="final-path">1.bam</strong>
545 </div>
546 </div>
547
548
549 <div class="commit commit-loader file-history-tease js-deferred-content" data-url="/bgruening/galaxytools/contributors/master/samtools_sort/test-data/1.bam">
550 <div class="file-history-tease-header">
551 Fetching contributors&hellip;
552 </div>
553
554 <div class="participation">
555 <p class="loader-loading"><img alt="" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32-EAF2F5.gif" width="16" /></p>
556 <p class="loader-error">Cannot retrieve contributors at this time</p>
557 </div>
558 </div>
559
560 <div class="file-box">
561 <div class="file">
562 <div class="meta clearfix">
563 <div class="info file-name">
564 <span>3.592 kb</span>
565 </div>
566 <div class="actions">
567 <div class="button-group">
568 <a href="/bgruening/galaxytools/raw/master/samtools_sort/test-data/1.bam" class="minibutton " id="raw-url">Raw</a>
569 <a href="/bgruening/galaxytools/commits/master/samtools_sort/test-data/1.bam" class="minibutton " rel="nofollow">History</a>
570 </div><!-- /.button-group -->
571
572 <a class="octicon-button tooltipped tooltipped-nw js-conduit-openfile-check"
573 href="http://mac.github.com"
574 data-url="github-mac://openRepo/https://github.com/bgruening/galaxytools?branch=master&amp;filepath=samtools_sort%2Ftest-data%2F1.bam"
575 aria-label="Open this file in GitHub for Mac"
576 data-failed-title="Your version of GitHub for Mac is too old to open this file. Try checking for updates.">
577 <span class="octicon octicon-device-desktop"></span>
578 </a>
579
580
581 <a class="octicon-button danger tooltipped tooltipped-s"
582 href="/bgruening/galaxytools/delete/master/samtools_sort/test-data/1.bam"
583 aria-label="Fork this project and delete file"
584 data-method="post" data-test-id="delete-blob-file" rel="nofollow">
585 <span class="octicon octicon-trashcan"></span>
586 </a>
587 </div><!-- /.actions -->
588 </div>
589
590 <div class="blob-wrapper data type-text">
591 <div class="image">
592 <a href="/bgruening/galaxytools/blob/master/samtools_sort/test-data/1.bam?raw=true">View Raw</a>
593 </div>
594 </div>
595
596 </div>
597 </div>
598
599 <a href="#jump-to-line" rel="facebox[.linejump]" data-hotkey="l" style="display:none">Jump to Line</a>
600 <div id="jump-to-line" style="display:none">
601 <form accept-charset="UTF-8" class="js-jump-to-line-form">
602 <input class="linejump-input js-jump-to-line-field" type="text" placeholder="Jump to line&hellip;" autofocus>
603 <button type="submit" class="button">Go</button>
604 </form>
605 </div>
606
607 </div>
608
609 </div><!-- /.repo-container -->
610 <div class="modal-backdrop"></div>
611 </div><!-- /.container -->
612 </div><!-- /.site -->
613
614
615 </div><!-- /.wrapper -->
616
617 <div class="container">
618 <div class="site-footer">
619 <ul class="site-footer-links right">
620 <li><a href="https://status.github.com/">Status</a></li>
621 <li><a href="http://developer.github.com">API</a></li>
622 <li><a href="http://training.github.com">Training</a></li>
623 <li><a href="http://shop.github.com">Shop</a></li>
624 <li><a href="/blog">Blog</a></li>
625 <li><a href="/about">About</a></li>
626
627 </ul>
628
629 <a href="/" aria-label="Homepage">
630 <span class="mega-octicon octicon-mark-github" title="GitHub"></span>
631 </a>
632
633 <ul class="site-footer-links">
634 <li>&copy; 2014 <span title="0.04588s from github-fe119-cp1-prd.iad.github.net">GitHub</span>, Inc.</li>
635 <li><a href="/site/terms">Terms</a></li>
636 <li><a href="/site/privacy">Privacy</a></li>
637 <li><a href="/security">Security</a></li>
638 <li><a href="/contact">Contact</a></li>
639 </ul>
640 </div><!-- /.site-footer -->
641 </div><!-- /.container -->
642
643
644 <div class="fullscreen-overlay js-fullscreen-overlay" id="fullscreen_overlay">
645 <div class="fullscreen-container js-suggester-container">
646 <div class="textarea-wrap">
647 <textarea name="fullscreen-contents" id="fullscreen-contents" class="fullscreen-contents js-fullscreen-contents js-suggester-field" placeholder=""></textarea>
648 </div>
649 </div>
650 <div class="fullscreen-sidebar">
651 <a href="#" class="exit-fullscreen js-exit-fullscreen tooltipped tooltipped-w" aria-label="Exit Zen Mode">
652 <span class="mega-octicon octicon-screen-normal"></span>
653 </a>
654 <a href="#" class="theme-switcher js-theme-switcher tooltipped tooltipped-w"
655 aria-label="Switch themes">
656 <span class="octicon octicon-color-mode"></span>
657 </a>
658 </div>
659 </div>
660
661
662
663 <div id="ajax-error-message" class="flash flash-error">
664 <span class="octicon octicon-alert"></span>
665 <a href="#" class="octicon octicon-x flash-close js-ajax-error-dismiss" aria-label="Dismiss error"></a>
666 Something went wrong with that request. Please try again.
667 </div>
668
669
670 <script crossorigin="anonymous" src="https://assets-cdn.github.com/assets/frameworks-0c1b00f7935ae85624f5fc5d40d52d60febf92b4.js" type="text/javascript"></script>
671 <script async="async" crossorigin="anonymous" src="https://assets-cdn.github.com/assets/github-cbba41b870c9e4d89d40771e5c675b37b14e9601.js" type="text/javascript"></script>
672
673
674 <script async src="https://www.google-analytics.com/analytics.js"></script>
675 </body>
676 </html>
677