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5 <!DOCTYPE html>
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6 <html lang="en" class="">
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7 <head prefix="og: http://ogp.me/ns# fb: http://ogp.me/ns/fb# object: http://ogp.me/ns/object# article: http://ogp.me/ns/article# profile: http://ogp.me/ns/profile#">
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11
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12
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13 <title>galaxytools/1_sort.bam at master ยท bgruening/galaxytools</title>
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14 <link rel="search" type="application/opensearchdescription+xml" href="/opensearch.xml" title="GitHub">
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40 <link rel="icon" type="image/x-icon" href="https://assets-cdn.github.com/favicon.ico">
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46 <link href="https://assets-cdn.github.com/assets/github-e98a2e283e3419aa85768affc5929842870bc5fc.css" media="all" rel="stylesheet" type="text/css" />
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54 <meta name="description" content="galaxytools - Galaxy Tool wrappers">
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55 <meta name="go-import" content="github.com/bgruening/galaxytools git https://github.com/bgruening/galaxytools.git">
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57 <meta content="469983" name="octolytics-dimension-user_id" /><meta content="bgruening" name="octolytics-dimension-user_login" /><meta content="6942323" name="octolytics-dimension-repository_id" /><meta content="bgruening/galaxytools" name="octolytics-dimension-repository_nwo" /><meta content="true" name="octolytics-dimension-repository_public" /><meta content="false" name="octolytics-dimension-repository_is_fork" /><meta content="6942323" name="octolytics-dimension-repository_network_root_id" /><meta content="bgruening/galaxytools" name="octolytics-dimension-repository_network_root_nwo" />
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58 <link href="https://github.com/bgruening/galaxytools/commits/master.atom" rel="alternate" title="Recent Commits to galaxytools:master" type="application/atom+xml">
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59
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60 </head>
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61
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62
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63 <body class="logged_in env-production macintosh vis-public page-blob">
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64 <a href="#start-of-content" tabindex="1" class="accessibility-aid js-skip-to-content">Skip to content</a>
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71
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72 <div class="header header-logged-in true">
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75 <a class="header-logo-invertocat" href="https://github.com/" aria-label="Homepage" ga-data-click="Header, go to dashboard, icon:logo">
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76 <span class="mega-octicon octicon-mark-github"></span>
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78
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79
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80 <div class="site-search repo-scope js-site-search">
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81 <form accept-charset="UTF-8" action="/bgruening/galaxytools/search" class="js-site-search-form" data-global-search-url="/search" data-repo-search-url="/bgruening/galaxytools/search" method="get"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /></div>
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82 <input type="text"
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83 class="js-site-search-field is-clearable"
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84 data-hotkey="s"
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85 name="q"
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86 placeholder="Search"
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87 data-global-scope-placeholder="Search GitHub"
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89 tabindex="1"
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90 autocapitalize="off">
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91 <div class="scope-badge">This repository</div>
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92 </form>
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93 </div>
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94 <ul class="header-nav left">
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95 <li class="header-nav-item explore">
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96 <a class="header-nav-link" href="/explore" data-ga-click="Header, go to explore, text:explore">Explore</a>
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97 </li>
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99 <a class="header-nav-link" href="https://gist.github.com" data-ga-click="Header, go to gist, text:gist">Gist</a>
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100 </li>
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101 <li class="header-nav-item">
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102 <a class="header-nav-link" href="/blog" data-ga-click="Header, go to blog, text:blog">Blog</a>
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105 <a class="header-nav-link" href="https://help.github.com" data-ga-click="Header, go to help, text:help">Help</a>
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106 </li>
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107 </ul>
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108
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109
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110 <ul class="header-nav user-nav right" id="user-links">
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111 <li class="header-nav-item dropdown js-menu-container">
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112 <a class="header-nav-link name" href="/martenson" data-ga-click="Header, go to profile, text:username">
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113 <img alt="Marten" class="avatar" data-user="1814954" height="20" src="https://avatars1.githubusercontent.com/u/1814954?v=2&s=40" width="20" />
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114 <span class="css-truncate">
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115 <span class="css-truncate-target">martenson</span>
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116 </span>
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117 </a>
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118 </li>
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119
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120 <li class="header-nav-item dropdown js-menu-container">
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121 <a class="header-nav-link js-menu-target tooltipped tooltipped-s" href="#" aria-label="Create new..." data-ga-click="Header, create new, icon:add">
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122 <span class="octicon octicon-plus"></span>
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123 <span class="dropdown-caret"></span>
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124 </a>
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125
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126 <div class="dropdown-menu-content js-menu-content">
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127
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128 <ul class="dropdown-menu">
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129 <li>
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130 <a href="/new"><span class="octicon octicon-repo"></span> New repository</a>
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131 </li>
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132 <li>
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133 <a href="/organizations/new"><span class="octicon octicon-organization"></span> New organization</a>
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134 </li>
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135
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136
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137 <li class="dropdown-divider"></li>
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138 <li class="dropdown-header">
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139 <span title="bgruening/galaxytools">This repository</span>
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140 </li>
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141 <li>
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142 <a href="/bgruening/galaxytools/issues/new"><span class="octicon octicon-issue-opened"></span> New issue</a>
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143 </li>
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144 </ul>
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145
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146 </div>
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147 </li>
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148
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149 <li class="header-nav-item">
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150 <a href="/notifications" aria-label="You have no unread notifications" class="header-nav-link notification-indicator tooltipped tooltipped-s" data-ga-click="Header, go to notifications, icon:read" data-hotkey="g n">
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151 <span class="mail-status all-read"></span>
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152 <span class="octicon octicon-inbox"></span>
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153 </a>
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154 </li>
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155
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156 <li class="header-nav-item">
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157 <a class="header-nav-link tooltipped tooltipped-s" href="/settings/profile" id="account_settings" aria-label="Settings" data-ga-click="Header, go to settings, icon:settings">
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158 <span class="octicon octicon-gear"></span>
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159 </a>
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160 </li>
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161
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162 <li class="header-nav-item">
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163 <form accept-charset="UTF-8" action="/logout" class="logout-form" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="L6BP5W4W9Z+oJeRBcH4vBF3A1QdSZ2FID2NdYb7Wv4/3uBRrqGGI4z2ZIv7hZvgYtsEWptUgykl1uaM3yIXqUg==" /></div>
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164 <button class="header-nav-link sign-out-button tooltipped tooltipped-s" aria-label="Sign out" data-ga-click="Header, sign out, icon:logout">
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165 <span class="octicon octicon-sign-out"></span>
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166 </button>
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167 </form> </li>
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168
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169 </ul>
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170
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171
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172
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173 </div>
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174 </div>
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175
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176
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177
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178
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179
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180
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181 <div id="start-of-content" class="accessibility-aid"></div>
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182 <div class="site" itemscope itemtype="http://schema.org/WebPage">
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183 <div id="js-flash-container">
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184
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185 </div>
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186 <div class="pagehead repohead instapaper_ignore readability-menu">
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187 <div class="container">
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188
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189 <ul class="pagehead-actions">
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190
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191 <li class="subscription">
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192 <form accept-charset="UTF-8" action="/notifications/subscribe" class="js-social-container" data-autosubmit="true" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="FHVcBANTJmtM5NnuPUxYkTcwD96IkHBEc5mz5H7fQsNWymspTCZPw3mP5/oxTaKQW/foviyUeRr2Rd+/A5TMIw==" /></div> <input id="repository_id" name="repository_id" type="hidden" value="6942323" />
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193
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194 <div class="select-menu js-menu-container js-select-menu">
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195 <a class="social-count js-social-count" href="/bgruening/galaxytools/watchers">
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196 18
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197 </a>
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198 <a href="/bgruening/galaxytools/subscription"
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199 class="minibutton select-menu-button with-count js-menu-target" role="button" tabindex="0" aria-haspopup="true">
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200 <span class="js-select-button">
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201 <span class="octicon octicon-eye"></span>
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202 Watch
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203 </span>
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204 </a>
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205
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206 <div class="select-menu-modal-holder">
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207 <div class="select-menu-modal subscription-menu-modal js-menu-content" aria-hidden="true">
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208 <div class="select-menu-header">
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209 <span class="select-menu-title">Notifications</span>
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210 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span>
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211 </div> <!-- /.select-menu-header -->
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212
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213 <div class="select-menu-list js-navigation-container" role="menu">
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214
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215 <div class="select-menu-item js-navigation-item selected" role="menuitem" tabindex="0">
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216 <span class="select-menu-item-icon octicon octicon-check"></span>
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217 <div class="select-menu-item-text">
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218 <input checked="checked" id="do_included" name="do" type="radio" value="included" />
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219 <h4>Not watching</h4>
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220 <span class="description">Be notified when participating or @mentioned.</span>
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221 <span class="js-select-button-text hidden-select-button-text">
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222 <span class="octicon octicon-eye"></span>
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223 Watch
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224 </span>
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225 </div>
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226 </div> <!-- /.select-menu-item -->
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227
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228 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0">
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229 <span class="select-menu-item-icon octicon octicon octicon-check"></span>
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230 <div class="select-menu-item-text">
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231 <input id="do_subscribed" name="do" type="radio" value="subscribed" />
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232 <h4>Watching</h4>
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233 <span class="description">Be notified of all conversations.</span>
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234 <span class="js-select-button-text hidden-select-button-text">
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235 <span class="octicon octicon-eye"></span>
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236 Unwatch
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237 </span>
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238 </div>
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239 </div> <!-- /.select-menu-item -->
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240
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241 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0">
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242 <span class="select-menu-item-icon octicon octicon-check"></span>
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243 <div class="select-menu-item-text">
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244 <input id="do_ignore" name="do" type="radio" value="ignore" />
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245 <h4>Ignoring</h4>
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246 <span class="description">Never be notified.</span>
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247 <span class="js-select-button-text hidden-select-button-text">
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248 <span class="octicon octicon-mute"></span>
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249 Stop ignoring
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250 </span>
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251 </div>
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252 </div> <!-- /.select-menu-item -->
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253
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254 </div> <!-- /.select-menu-list -->
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255
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256 </div> <!-- /.select-menu-modal -->
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257 </div> <!-- /.select-menu-modal-holder -->
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258 </div> <!-- /.select-menu -->
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259
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260 </form>
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261 </li>
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262
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263 <li>
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264
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265 <div class="js-toggler-container js-social-container starring-container on">
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266
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267 <form accept-charset="UTF-8" action="/bgruening/galaxytools/unstar" class="js-toggler-form starred js-unstar-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="Vy7np1X5m4sPSnkZoaY0N1rtbrCOuk7kQyn6IvIYX4JY6RhqZeijiQ7bsQj0wJmKQT+0NzU7WxM/GOUstOip1g==" /></div>
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268 <button
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269 class="minibutton with-count js-toggler-target star-button"
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270 aria-label="Unstar this repository" title="Unstar bgruening/galaxytools">
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271 <span class="octicon octicon-star"></span>
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272 Unstar
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273 </button>
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274 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers">
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275 20
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276 </a>
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277 </form>
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278 <form accept-charset="UTF-8" action="/bgruening/galaxytools/star" class="js-toggler-form unstarred js-star-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="PhbWFenPrMpMBlgAxX5oz4SjpNIMd5k4jts4kaEQ7xY2m3NCNjLmGBRCMA4OtOoGJKxM3g/+kX52cbINCkrlUQ==" /></div>
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279 <button
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280 class="minibutton with-count js-toggler-target star-button"
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281 aria-label="Star this repository" title="Star bgruening/galaxytools">
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282 <span class="octicon octicon-star"></span>
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283 Star
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284 </button>
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285 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers">
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286 20
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287 </a>
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288 </form> </div>
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289
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290 </li>
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291
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292
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293 <li>
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294 <a href="/bgruening/galaxytools/fork" class="minibutton with-count js-toggler-target fork-button tooltipped-n" title="Fork your own copy of bgruening/galaxytools to your account" aria-label="Fork your own copy of bgruening/galaxytools to your account" rel="nofollow" data-method="post">
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295 <span class="octicon octicon-repo-forked"></span>
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296 Fork
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297 </a>
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298 <a href="/bgruening/galaxytools/network" class="social-count">22</a>
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299 </li>
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300
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301 </ul>
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302
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303 <h1 itemscope itemtype="http://data-vocabulary.org/Breadcrumb" class="entry-title public">
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304 <span class="mega-octicon octicon-repo"></span>
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305 <span class="author"><a href="/bgruening" class="url fn" itemprop="url" rel="author"><span itemprop="title">bgruening</span></a></span><!--
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306 --><span class="path-divider">/</span><!--
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307 --><strong><a href="/bgruening/galaxytools" class="js-current-repository js-repo-home-link">galaxytools</a></strong>
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308
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309 <span class="page-context-loader">
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310 <img alt="" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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311 </span>
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312
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313 </h1>
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314 </div><!-- /.container -->
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315 </div><!-- /.repohead -->
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316
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317 <div class="container">
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318 <div class="repository-with-sidebar repo-container new-discussion-timeline ">
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319 <div class="repository-sidebar clearfix">
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320
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321 <div class="sunken-menu vertical-right repo-nav js-repo-nav js-repository-container-pjax js-octicon-loaders" data-issue-count-url="/bgruening/galaxytools/issues/counts">
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322 <div class="sunken-menu-contents">
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323 <ul class="sunken-menu-group">
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324 <li class="tooltipped tooltipped-w" aria-label="Code">
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325 <a href="/bgruening/galaxytools" aria-label="Code" class="selected js-selected-navigation-item sunken-menu-item" data-hotkey="g c" data-pjax="true" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches /bgruening/galaxytools">
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326 <span class="octicon octicon-code"></span> <span class="full-word">Code</span>
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327 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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328 </a> </li>
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329
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330 <li class="tooltipped tooltipped-w" aria-label="Issues">
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331 <a href="/bgruening/galaxytools/issues" aria-label="Issues" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g i" data-selected-links="repo_issues repo_labels repo_milestones /bgruening/galaxytools/issues">
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332 <span class="octicon octicon-issue-opened"></span> <span class="full-word">Issues</span>
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333 <span class="js-issue-replace-counter"></span>
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334 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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335 </a> </li>
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336
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337 <li class="tooltipped tooltipped-w" aria-label="Pull Requests">
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338 <a href="/bgruening/galaxytools/pulls" aria-label="Pull Requests" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g p" data-selected-links="repo_pulls /bgruening/galaxytools/pulls">
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339 <span class="octicon octicon-git-pull-request"></span> <span class="full-word">Pull Requests</span>
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340 <span class="js-pull-replace-counter"></span>
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341 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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342 </a> </li>
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343
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344
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345 <li class="tooltipped tooltipped-w" aria-label="Wiki">
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346 <a href="/bgruening/galaxytools/wiki" aria-label="Wiki" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g w" data-selected-links="repo_wiki /bgruening/galaxytools/wiki">
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347 <span class="octicon octicon-book"></span> <span class="full-word">Wiki</span>
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348 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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349 </a> </li>
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350 </ul>
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351 <div class="sunken-menu-separator"></div>
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352 <ul class="sunken-menu-group">
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353
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354 <li class="tooltipped tooltipped-w" aria-label="Pulse">
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355 <a href="/bgruening/galaxytools/pulse/weekly" aria-label="Pulse" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="pulse /bgruening/galaxytools/pulse/weekly">
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356 <span class="octicon octicon-pulse"></span> <span class="full-word">Pulse</span>
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357 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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358 </a> </li>
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359
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360 <li class="tooltipped tooltipped-w" aria-label="Graphs">
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361 <a href="/bgruening/galaxytools/graphs" aria-label="Graphs" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="repo_graphs repo_contributors /bgruening/galaxytools/graphs">
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362 <span class="octicon octicon-graph"></span> <span class="full-word">Graphs</span>
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363 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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364 </a> </li>
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365 </ul>
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366
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367
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368 </div>
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369 </div>
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370
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371 <div class="only-with-full-nav">
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372
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373
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374 <div class="clone-url open"
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375 data-protocol-type="http"
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376 data-url="/users/set_protocol?protocol_selector=http&protocol_type=clone">
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377 <h3><span class="text-emphasized">HTTPS</span> clone URL</h3>
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378 <div class="input-group">
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379 <input type="text" class="input-mini input-monospace js-url-field"
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380 value="https://github.com/bgruening/galaxytools.git" readonly="readonly">
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381 <span class="input-group-button">
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382 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools.git" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
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383 </span>
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384 </div>
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385 </div>
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386
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387
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388 <div class="clone-url "
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389 data-protocol-type="ssh"
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390 data-url="/users/set_protocol?protocol_selector=ssh&protocol_type=clone">
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391 <h3><span class="text-emphasized">SSH</span> clone URL</h3>
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392 <div class="input-group">
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393 <input type="text" class="input-mini input-monospace js-url-field"
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394 value="git@github.com:bgruening/galaxytools.git" readonly="readonly">
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395 <span class="input-group-button">
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396 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="git@github.com:bgruening/galaxytools.git" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
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397 </span>
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398 </div>
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399 </div>
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400
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401
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402 <div class="clone-url "
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403 data-protocol-type="subversion"
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404 data-url="/users/set_protocol?protocol_selector=subversion&protocol_type=clone">
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405 <h3><span class="text-emphasized">Subversion</span> checkout URL</h3>
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406 <div class="input-group">
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407 <input type="text" class="input-mini input-monospace js-url-field"
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408 value="https://github.com/bgruening/galaxytools" readonly="readonly">
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409 <span class="input-group-button">
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410 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
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411 </span>
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412 </div>
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413 </div>
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414
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415
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416 <p class="clone-options">You can clone with
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417 <a href="#" class="js-clone-selector" data-protocol="http">HTTPS</a>,
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418 <a href="#" class="js-clone-selector" data-protocol="ssh">SSH</a>,
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419 or <a href="#" class="js-clone-selector" data-protocol="subversion">Subversion</a>.
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420 <a href="https://help.github.com/articles/which-remote-url-should-i-use" class="help tooltipped tooltipped-n" aria-label="Get help on which URL is right for you.">
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421 <span class="octicon octicon-question"></span>
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422 </a>
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423 </p>
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424
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425 <a href="http://mac.github.com" data-url="github-mac://openRepo/https://github.com/bgruening/galaxytools" class="minibutton sidebar-button js-conduit-rewrite-url" title="Save bgruening/galaxytools to your computer and use it in GitHub Desktop." aria-label="Save bgruening/galaxytools to your computer and use it in GitHub Desktop.">
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426 <span class="octicon octicon-device-desktop"></span>
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427 Clone in Desktop
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428 </a>
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429
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430
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431 <a href="/bgruening/galaxytools/archive/master.zip"
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432 class="minibutton sidebar-button"
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433 aria-label="Download the contents of bgruening/galaxytools as a zip file"
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434 title="Download the contents of bgruening/galaxytools as a zip file"
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435 rel="nofollow">
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436 <span class="octicon octicon-cloud-download"></span>
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437 Download ZIP
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438 </a>
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439 </div>
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440 </div><!-- /.repository-sidebar -->
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441
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442 <div id="js-repo-pjax-container" class="repository-content context-loader-container" data-pjax-container>
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443
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444
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445 <a href="/bgruening/galaxytools/blob/3a57ada6062aa513010b1bc15048135d4207f337/samtools_sort/test-data/1_sort.bam" class="hidden js-permalink-shortcut" data-hotkey="y">Permalink</a>
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446
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447 <!-- blob contrib key: blob_contributors:v21:f122cca0ab5757362bdf76ee45b75705 -->
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448
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449 <div class="file-navigation">
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450
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451 <div class="select-menu js-menu-container js-select-menu left">
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452 <span class="minibutton select-menu-button js-menu-target css-truncate" data-hotkey="w"
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453 data-master-branch="master"
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454 data-ref="master"
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455 title="master"
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456 role="button" aria-label="Switch branches or tags" tabindex="0" aria-haspopup="true">
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|
457 <span class="octicon octicon-git-branch"></span>
|
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458 <i>branch:</i>
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459 <span class="js-select-button css-truncate-target">master</span>
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460 </span>
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461
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462 <div class="select-menu-modal-holder js-menu-content js-navigation-container" data-pjax aria-hidden="true">
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463
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464 <div class="select-menu-modal">
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465 <div class="select-menu-header">
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466 <span class="select-menu-title">Switch branches/tags</span>
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467 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span>
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468 </div> <!-- /.select-menu-header -->
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469
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470 <div class="select-menu-filters">
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471 <div class="select-menu-text-filter">
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472 <input type="text" aria-label="Filter branches/tags" id="context-commitish-filter-field" class="js-filterable-field js-navigation-enable" placeholder="Filter branches/tags">
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473 </div>
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474 <div class="select-menu-tabs">
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475 <ul>
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476 <li class="select-menu-tab">
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477 <a href="#" data-tab-filter="branches" class="js-select-menu-tab">Branches</a>
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478 </li>
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479 <li class="select-menu-tab">
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480 <a href="#" data-tab-filter="tags" class="js-select-menu-tab">Tags</a>
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481 </li>
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482 </ul>
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483 </div><!-- /.select-menu-tabs -->
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484 </div><!-- /.select-menu-filters -->
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485
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486 <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="branches">
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487
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488 <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring">
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489
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490
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491 <div class="select-menu-item js-navigation-item ">
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492 <span class="select-menu-item-icon octicon octicon-check"></span>
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493 <a href="/bgruening/galaxytools/blob/gh-pages/samtools_sort/test-data/1_sort.bam"
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494 data-name="gh-pages"
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495 data-skip-pjax="true"
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496 rel="nofollow"
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497 class="js-navigation-open select-menu-item-text css-truncate-target"
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498 title="gh-pages">gh-pages</a>
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499 </div> <!-- /.select-menu-item -->
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500 <div class="select-menu-item js-navigation-item selected">
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501 <span class="select-menu-item-icon octicon octicon-check"></span>
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502 <a href="/bgruening/galaxytools/blob/master/samtools_sort/test-data/1_sort.bam"
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503 data-name="master"
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504 data-skip-pjax="true"
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505 rel="nofollow"
|
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506 class="js-navigation-open select-menu-item-text css-truncate-target"
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507 title="master">master</a>
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508 </div> <!-- /.select-menu-item -->
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509 </div>
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510
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511 <div class="select-menu-no-results">Nothing to show</div>
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512 </div> <!-- /.select-menu-list -->
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513
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514 <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="tags">
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515 <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring">
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516
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517
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518 </div>
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519
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520 <div class="select-menu-no-results">Nothing to show</div>
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521 </div> <!-- /.select-menu-list -->
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522
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523 </div> <!-- /.select-menu-modal -->
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524 </div> <!-- /.select-menu-modal-holder -->
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525 </div> <!-- /.select-menu -->
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526
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527 <div class="button-group right">
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528 <a href="/bgruening/galaxytools/find/master"
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529 class="js-show-file-finder minibutton empty-icon tooltipped tooltipped-s"
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530 data-pjax
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531 data-hotkey="t"
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532 aria-label="Quickly jump between files">
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533 <span class="octicon octicon-list-unordered"></span>
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534 </a>
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535 <button class="js-zeroclipboard minibutton zeroclipboard-button"
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536 data-clipboard-text="samtools_sort/test-data/1_sort.bam"
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537 aria-label="Copy to clipboard"
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538 data-copied-hint="Copied!">
|
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539 <span class="octicon octicon-clippy"></span>
|
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540 </button>
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541 </div>
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542
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543 <div class="breadcrumb">
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544 <span class='repo-root js-repo-root'><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">galaxytools</span></a></span></span><span class="separator"> / </span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools/tree/master/samtools_sort" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">samtools_sort</span></a></span><span class="separator"> / </span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools/tree/master/samtools_sort/test-data" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">test-data</span></a></span><span class="separator"> / </span><strong class="final-path">1_sort.bam</strong>
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545 </div>
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546 </div>
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547
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548
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549 <div class="commit commit-loader file-history-tease js-deferred-content" data-url="/bgruening/galaxytools/contributors/master/samtools_sort/test-data/1_sort.bam">
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550 <div class="file-history-tease-header">
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551 Fetching contributors…
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552 </div>
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553
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554 <div class="participation">
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555 <p class="loader-loading"><img alt="" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32-EAF2F5.gif" width="16" /></p>
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556 <p class="loader-error">Cannot retrieve contributors at this time</p>
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557 </div>
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558 </div>
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559
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560 <div class="file-box">
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561 <div class="file">
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562 <div class="meta clearfix">
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563 <div class="info file-name">
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564 <span>3.491 kb</span>
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565 </div>
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566 <div class="actions">
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567 <div class="button-group">
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568 <a href="/bgruening/galaxytools/raw/master/samtools_sort/test-data/1_sort.bam" class="minibutton " id="raw-url">Raw</a>
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569 <a href="/bgruening/galaxytools/commits/master/samtools_sort/test-data/1_sort.bam" class="minibutton " rel="nofollow">History</a>
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570 </div><!-- /.button-group -->
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571
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572 <a class="octicon-button tooltipped tooltipped-nw js-conduit-openfile-check"
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573 href="http://mac.github.com"
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574 data-url="github-mac://openRepo/https://github.com/bgruening/galaxytools?branch=master&filepath=samtools_sort%2Ftest-data%2F1_sort.bam"
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575 aria-label="Open this file in GitHub for Mac"
|
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576 data-failed-title="Your version of GitHub for Mac is too old to open this file. Try checking for updates.">
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577 <span class="octicon octicon-device-desktop"></span>
|
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578 </a>
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579
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580
|
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581 <a class="octicon-button danger tooltipped tooltipped-s"
|
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582 href="/bgruening/galaxytools/delete/master/samtools_sort/test-data/1_sort.bam"
|
|
|
583 aria-label="Fork this project and delete file"
|
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584 data-method="post" data-test-id="delete-blob-file" rel="nofollow">
|
|
|
585 <span class="octicon octicon-trashcan"></span>
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586 </a>
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587 </div><!-- /.actions -->
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588 </div>
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589
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590 <div class="blob-wrapper data type-text">
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591 <div class="image">
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592 <a href="/bgruening/galaxytools/blob/master/samtools_sort/test-data/1_sort.bam?raw=true">View Raw</a>
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593 </div>
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594 </div>
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595
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596 </div>
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597 </div>
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598
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599 <a href="#jump-to-line" rel="facebox[.linejump]" data-hotkey="l" style="display:none">Jump to Line</a>
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600 <div id="jump-to-line" style="display:none">
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601 <form accept-charset="UTF-8" class="js-jump-to-line-form">
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602 <input class="linejump-input js-jump-to-line-field" type="text" placeholder="Jump to line…" autofocus>
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603 <button type="submit" class="button">Go</button>
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604 </form>
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605 </div>
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606
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607 </div>
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608
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609 </div><!-- /.repo-container -->
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610 <div class="modal-backdrop"></div>
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611 </div><!-- /.container -->
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612 </div><!-- /.site -->
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613
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614
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615 </div><!-- /.wrapper -->
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616
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617 <div class="container">
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618 <div class="site-footer">
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619 <ul class="site-footer-links right">
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620 <li><a href="https://status.github.com/">Status</a></li>
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621 <li><a href="http://developer.github.com">API</a></li>
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622 <li><a href="http://training.github.com">Training</a></li>
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623 <li><a href="http://shop.github.com">Shop</a></li>
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624 <li><a href="/blog">Blog</a></li>
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625 <li><a href="/about">About</a></li>
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626
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627 </ul>
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628
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629 <a href="/" aria-label="Homepage">
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630 <span class="mega-octicon octicon-mark-github" title="GitHub"></span>
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631 </a>
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632
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633 <ul class="site-footer-links">
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634 <li>© 2014 <span title="0.04448s from github-fe129-cp1-prd.iad.github.net">GitHub</span>, Inc.</li>
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635 <li><a href="/site/terms">Terms</a></li>
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637 <li><a href="/security">Security</a></li>
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638 <li><a href="/contact">Contact</a></li>
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639 </ul>
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640 </div><!-- /.site-footer -->
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642
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643
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644 <div class="fullscreen-overlay js-fullscreen-overlay" id="fullscreen_overlay">
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645 <div class="fullscreen-container js-suggester-container">
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646 <div class="textarea-wrap">
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647 <textarea name="fullscreen-contents" id="fullscreen-contents" class="fullscreen-contents js-fullscreen-contents js-suggester-field" placeholder=""></textarea>
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648 </div>
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649 </div>
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650 <div class="fullscreen-sidebar">
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651 <a href="#" class="exit-fullscreen js-exit-fullscreen tooltipped tooltipped-w" aria-label="Exit Zen Mode">
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652 <span class="mega-octicon octicon-screen-normal"></span>
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655 aria-label="Switch themes">
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656 <span class="octicon octicon-color-mode"></span>
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659 </div>
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660
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661
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662
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668
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669
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672
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675 </body>
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677
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