annotate test-data/1.bam @ 0:4cafbe1d2ea6

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13 <title>galaxytools/1.bam at master ยท bgruening/galaxytools</title>
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142 <a href="/bgruening/galaxytools/issues/new"><span class="octicon octicon-issue-opened"></span> New issue</a>
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143 </li>
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144 </ul>
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145
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146 </div>
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147 </li>
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148
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149 <li class="header-nav-item">
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150 <a href="/notifications" aria-label="You have no unread notifications" class="header-nav-link notification-indicator tooltipped tooltipped-s" data-ga-click="Header, go to notifications, icon:read" data-hotkey="g n">
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151 <span class="mail-status all-read"></span>
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152 <span class="octicon octicon-inbox"></span>
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153 </a>
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154 </li>
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155
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156 <li class="header-nav-item">
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157 <a class="header-nav-link tooltipped tooltipped-s" href="/settings/profile" id="account_settings" aria-label="Settings" data-ga-click="Header, go to settings, icon:settings">
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158 <span class="octicon octicon-gear"></span>
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159 </a>
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160 </li>
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161
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162 <li class="header-nav-item">
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163 <form accept-charset="UTF-8" action="/logout" class="logout-form" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="NzkdsDLfeT4a64PQx4j3B7Sf5GGdO8VeIcXWwQSlOlPaB2GjHeph/uYMpoTfZ8ab3QNJLIROIevfBAbM9RgttA==" /></div>
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164 <button class="header-nav-link sign-out-button tooltipped tooltipped-s" aria-label="Sign out" data-ga-click="Header, sign out, icon:logout">
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165 <span class="octicon octicon-sign-out"></span>
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166 </button>
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167 </form> </li>
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168
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169 </ul>
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170
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171
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172
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173 </div>
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174 </div>
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175
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176
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179
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180
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181 <div id="start-of-content" class="accessibility-aid"></div>
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182 <div class="site" itemscope itemtype="http://schema.org/WebPage">
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183 <div id="js-flash-container">
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184
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185 </div>
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186 <div class="pagehead repohead instapaper_ignore readability-menu">
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187 <div class="container">
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188
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189 <ul class="pagehead-actions">
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190
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191 <li class="subscription">
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192 <form accept-charset="UTF-8" action="/notifications/subscribe" class="js-social-container" data-autosubmit="true" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="02SnxhR2K3xw3On7N4Xa5X6FecQsLPBr/ebUTSWXG4bJZ4F2Qdt07Fcx1omyGSVHJWkSf1kDEk66MeMk+vv09g==" /></div> <input id="repository_id" name="repository_id" type="hidden" value="6942323" />
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193
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194 <div class="select-menu js-menu-container js-select-menu">
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195 <a class="social-count js-social-count" href="/bgruening/galaxytools/watchers">
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196 18
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197 </a>
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198 <a href="/bgruening/galaxytools/subscription"
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199 class="minibutton select-menu-button with-count js-menu-target" role="button" tabindex="0" aria-haspopup="true">
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200 <span class="js-select-button">
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201 <span class="octicon octicon-eye"></span>
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202 Watch
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martenson <cech.marten@gmail.com>
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203 </span>
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204 </a>
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205
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206 <div class="select-menu-modal-holder">
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207 <div class="select-menu-modal subscription-menu-modal js-menu-content" aria-hidden="true">
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208 <div class="select-menu-header">
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209 <span class="select-menu-title">Notifications</span>
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210 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span>
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211 </div> <!-- /.select-menu-header -->
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212
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213 <div class="select-menu-list js-navigation-container" role="menu">
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214
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215 <div class="select-menu-item js-navigation-item selected" role="menuitem" tabindex="0">
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216 <span class="select-menu-item-icon octicon octicon-check"></span>
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217 <div class="select-menu-item-text">
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218 <input checked="checked" id="do_included" name="do" type="radio" value="included" />
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219 <h4>Not watching</h4>
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220 <span class="description">Be notified when participating or @mentioned.</span>
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221 <span class="js-select-button-text hidden-select-button-text">
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222 <span class="octicon octicon-eye"></span>
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223 Watch
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martenson <cech.marten@gmail.com>
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224 </span>
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225 </div>
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226 </div> <!-- /.select-menu-item -->
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227
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228 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0">
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229 <span class="select-menu-item-icon octicon octicon octicon-check"></span>
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230 <div class="select-menu-item-text">
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231 <input id="do_subscribed" name="do" type="radio" value="subscribed" />
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232 <h4>Watching</h4>
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233 <span class="description">Be notified of all conversations.</span>
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234 <span class="js-select-button-text hidden-select-button-text">
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235 <span class="octicon octicon-eye"></span>
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236 Unwatch
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237 </span>
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martenson <cech.marten@gmail.com>
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238 </div>
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martenson <cech.marten@gmail.com>
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239 </div> <!-- /.select-menu-item -->
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240
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241 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0">
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242 <span class="select-menu-item-icon octicon octicon-check"></span>
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243 <div class="select-menu-item-text">
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244 <input id="do_ignore" name="do" type="radio" value="ignore" />
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245 <h4>Ignoring</h4>
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246 <span class="description">Never be notified.</span>
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247 <span class="js-select-button-text hidden-select-button-text">
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248 <span class="octicon octicon-mute"></span>
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249 Stop ignoring
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250 </span>
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251 </div>
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252 </div> <!-- /.select-menu-item -->
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253
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254 </div> <!-- /.select-menu-list -->
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255
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256 </div> <!-- /.select-menu-modal -->
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257 </div> <!-- /.select-menu-modal-holder -->
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258 </div> <!-- /.select-menu -->
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259
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260 </form>
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261 </li>
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262
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263 <li>
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264
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265 <div class="js-toggler-container js-social-container starring-container on">
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266
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267 <form accept-charset="UTF-8" action="/bgruening/galaxytools/unstar" class="js-toggler-form starred js-unstar-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="OkB8VOG5D9GOuAv/3N5ACw0Wbx6boPWGp7v0UXxJz6mvRDAUxHp/F+wjWiLvOIYpbwfuIiVzQj9zeTVprn+dFw==" /></div>
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268 <button
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269 class="minibutton with-count js-toggler-target star-button"
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martenson <cech.marten@gmail.com>
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270 aria-label="Unstar this repository" title="Unstar bgruening/galaxytools">
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martenson <cech.marten@gmail.com>
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271 <span class="octicon octicon-star"></span>
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martenson <cech.marten@gmail.com>
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272 Unstar
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martenson <cech.marten@gmail.com>
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273 </button>
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274 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers">
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275 20
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276 </a>
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277 </form>
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278 <form accept-charset="UTF-8" action="/bgruening/galaxytools/star" class="js-toggler-form unstarred js-star-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="tLiPR01TBugEEpxrmnGopJk4XCODnKU/26yQ5fZQm5Kb8B5d4c0VaCTo7cgusG/nL82E3fnhStUCP+2He4bsJQ==" /></div>
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279 <button
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280 class="minibutton with-count js-toggler-target star-button"
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281 aria-label="Star this repository" title="Star bgruening/galaxytools">
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282 <span class="octicon octicon-star"></span>
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283 Star
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martenson <cech.marten@gmail.com>
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284 </button>
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285 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers">
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286 20
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287 </a>
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288 </form> </div>
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289
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290 </li>
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291
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293 <li>
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294 <a href="/bgruening/galaxytools/fork" class="minibutton with-count js-toggler-target fork-button tooltipped-n" title="Fork your own copy of bgruening/galaxytools to your account" aria-label="Fork your own copy of bgruening/galaxytools to your account" rel="nofollow" data-method="post">
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295 <span class="octicon octicon-repo-forked"></span>
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296 Fork
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297 </a>
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298 <a href="/bgruening/galaxytools/network" class="social-count">22</a>
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299 </li>
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300
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301 </ul>
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302
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303 <h1 itemscope itemtype="http://data-vocabulary.org/Breadcrumb" class="entry-title public">
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304 <span class="mega-octicon octicon-repo"></span>
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305 <span class="author"><a href="/bgruening" class="url fn" itemprop="url" rel="author"><span itemprop="title">bgruening</span></a></span><!--
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306 --><span class="path-divider">/</span><!--
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307 --><strong><a href="/bgruening/galaxytools" class="js-current-repository js-repo-home-link">galaxytools</a></strong>
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308
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309 <span class="page-context-loader">
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310 <img alt="" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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311 </span>
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312
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313 </h1>
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314 </div><!-- /.container -->
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315 </div><!-- /.repohead -->
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316
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317 <div class="container">
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318 <div class="repository-with-sidebar repo-container new-discussion-timeline ">
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319 <div class="repository-sidebar clearfix">
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321 <div class="sunken-menu vertical-right repo-nav js-repo-nav js-repository-container-pjax js-octicon-loaders" data-issue-count-url="/bgruening/galaxytools/issues/counts">
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322 <div class="sunken-menu-contents">
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323 <ul class="sunken-menu-group">
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324 <li class="tooltipped tooltipped-w" aria-label="Code">
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325 <a href="/bgruening/galaxytools" aria-label="Code" class="selected js-selected-navigation-item sunken-menu-item" data-hotkey="g c" data-pjax="true" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches /bgruening/galaxytools">
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326 <span class="octicon octicon-code"></span> <span class="full-word">Code</span>
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327 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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328 </a> </li>
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329
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330 <li class="tooltipped tooltipped-w" aria-label="Issues">
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331 <a href="/bgruening/galaxytools/issues" aria-label="Issues" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g i" data-selected-links="repo_issues repo_labels repo_milestones /bgruening/galaxytools/issues">
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332 <span class="octicon octicon-issue-opened"></span> <span class="full-word">Issues</span>
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333 <span class="js-issue-replace-counter"></span>
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334 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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335 </a> </li>
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336
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337 <li class="tooltipped tooltipped-w" aria-label="Pull Requests">
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338 <a href="/bgruening/galaxytools/pulls" aria-label="Pull Requests" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g p" data-selected-links="repo_pulls /bgruening/galaxytools/pulls">
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339 <span class="octicon octicon-git-pull-request"></span> <span class="full-word">Pull Requests</span>
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340 <span class="js-pull-replace-counter"></span>
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341 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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342 </a> </li>
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343
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344
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345 <li class="tooltipped tooltipped-w" aria-label="Wiki">
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346 <a href="/bgruening/galaxytools/wiki" aria-label="Wiki" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g w" data-selected-links="repo_wiki /bgruening/galaxytools/wiki">
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347 <span class="octicon octicon-book"></span> <span class="full-word">Wiki</span>
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348 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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349 </a> </li>
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350 </ul>
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351 <div class="sunken-menu-separator"></div>
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352 <ul class="sunken-menu-group">
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353
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354 <li class="tooltipped tooltipped-w" aria-label="Pulse">
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355 <a href="/bgruening/galaxytools/pulse/weekly" aria-label="Pulse" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="pulse /bgruening/galaxytools/pulse/weekly">
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356 <span class="octicon octicon-pulse"></span> <span class="full-word">Pulse</span>
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357 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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358 </a> </li>
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359
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360 <li class="tooltipped tooltipped-w" aria-label="Graphs">
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361 <a href="/bgruening/galaxytools/graphs" aria-label="Graphs" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="repo_graphs repo_contributors /bgruening/galaxytools/graphs">
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362 <span class="octicon octicon-graph"></span> <span class="full-word">Graphs</span>
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363 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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364 </a> </li>
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365 </ul>
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366
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367
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368 </div>
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369 </div>
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370
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371 <div class="only-with-full-nav">
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372
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373
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374 <div class="clone-url open"
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375 data-protocol-type="http"
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376 data-url="/users/set_protocol?protocol_selector=http&amp;protocol_type=clone">
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377 <h3><span class="text-emphasized">HTTPS</span> clone URL</h3>
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378 <div class="input-group">
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379 <input type="text" class="input-mini input-monospace js-url-field"
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380 value="https://github.com/bgruening/galaxytools.git" readonly="readonly">
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381 <span class="input-group-button">
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382 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools.git" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
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383 </span>
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384 </div>
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385 </div>
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386
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387
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388 <div class="clone-url "
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389 data-protocol-type="ssh"
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390 data-url="/users/set_protocol?protocol_selector=ssh&amp;protocol_type=clone">
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391 <h3><span class="text-emphasized">SSH</span> clone URL</h3>
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392 <div class="input-group">
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393 <input type="text" class="input-mini input-monospace js-url-field"
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394 value="git@github.com:bgruening/galaxytools.git" readonly="readonly">
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395 <span class="input-group-button">
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396 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="git@github.com:bgruening/galaxytools.git" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
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397 </span>
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398 </div>
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399 </div>
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400
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401
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402 <div class="clone-url "
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403 data-protocol-type="subversion"
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404 data-url="/users/set_protocol?protocol_selector=subversion&amp;protocol_type=clone">
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405 <h3><span class="text-emphasized">Subversion</span> checkout URL</h3>
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406 <div class="input-group">
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407 <input type="text" class="input-mini input-monospace js-url-field"
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408 value="https://github.com/bgruening/galaxytools" readonly="readonly">
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409 <span class="input-group-button">
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410 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
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411 </span>
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412 </div>
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413 </div>
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414
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415
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416 <p class="clone-options">You can clone with
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417 <a href="#" class="js-clone-selector" data-protocol="http">HTTPS</a>,
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418 <a href="#" class="js-clone-selector" data-protocol="ssh">SSH</a>,
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419 or <a href="#" class="js-clone-selector" data-protocol="subversion">Subversion</a>.
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420 <a href="https://help.github.com/articles/which-remote-url-should-i-use" class="help tooltipped tooltipped-n" aria-label="Get help on which URL is right for you.">
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421 <span class="octicon octicon-question"></span>
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422 </a>
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423 </p>
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424
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425 <a href="http://mac.github.com" data-url="github-mac://openRepo/https://github.com/bgruening/galaxytools" class="minibutton sidebar-button js-conduit-rewrite-url" title="Save bgruening/galaxytools to your computer and use it in GitHub Desktop." aria-label="Save bgruening/galaxytools to your computer and use it in GitHub Desktop.">
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426 <span class="octicon octicon-device-desktop"></span>
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427 Clone in Desktop
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428 </a>
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429
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430
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431 <a href="/bgruening/galaxytools/archive/master.zip"
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432 class="minibutton sidebar-button"
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