Mercurial > repos > devteam > samtools_idxstats
comparison samtools_idxstats.xml @ 5:fd87401a3da6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_idxstats commit 558d30ff047fe2f62658e8b57e27ebe8db77ede1"
| author | iuc |
|---|---|
| date | Fri, 06 Sep 2019 11:21:38 -0400 |
| parents | 56838051b673 |
| children | 9a12e8643fc5 |
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| 4:56838051b673 | 5:fd87401a3da6 |
|---|---|
| 1 <tool id="samtools_idxstats" name="Samtools idxstats" version="2.0.2"> | 1 <tool id="samtools_idxstats" name="Samtools idxstats" version="2.0.3"> |
| 2 <description>reports stats of the BAM index file</description> | 2 <description>reports stats of the BAM index file</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 60 | 60 |
| 61 In this example there were 604 contigs, each with one line in the output table, | 61 In this example there were 604 contigs, each with one line in the output table, |
| 62 plus the final row (labelled with an asterisk) representing 50320 unmapped reads. | 62 plus the final row (labelled with an asterisk) representing 50320 unmapped reads. |
| 63 In this BAM file, the final column was otherwise zero. | 63 In this BAM file, the final column was otherwise zero. |
| 64 | 64 |
| 65 | |
| 66 The results of samtools ixdstats can be visualized with MultiQC. | |
| 67 | |
| 65 ------ | 68 ------ |
| 66 | 69 |
| 67 Peter J.A. Cock (2013), `Galaxy wrapper <https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_idxstats>`_ for the samtools idxstats command | 70 Peter J.A. Cock (2013), `Galaxy wrapper <https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_idxstats>`_ for the samtools idxstats command |
| 68 ]]></help> | 71 ]]></help> |
| 69 <expand macro="citations"/> | 72 <expand macro="citations"/> |