# HG changeset patch
# User devteam
# Date 1450485873 18000
# Node ID 7b6dcfbdc6a9ba5b4f9d3db6b7a11ad23f31bc68
# Parent  10b658bef71acc479fb4930cd53d90f84a9cefe5
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_flagstat commit de7140295cce07e1bc1697e51dab4271c8d7a8a6

diff -r 10b658bef71a -r 7b6dcfbdc6a9 macros.xml
--- a/macros.xml	Tue Oct 13 12:54:34 2015 -0400
+++ b/macros.xml	Fri Dec 18 19:44:33 2015 -0500
@@ -41,7 +41,7 @@
         </citations>
     </xml>
     <xml name="version_command">
-        <version_command>samtools --version | head -n 1 | awk '{ print $2 }'</version_command>
+        <version_command>echo $(samtools --version | head -n 1)", "$(samtools --version | grep -o -E "htslib.*?")</version_command>
     </xml>
     <xml name="stdio">
         <stdio>
diff -r 10b658bef71a -r 7b6dcfbdc6a9 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 13 12:54:34 2015 -0400
+++ b/tool_dependencies.xml	Fri Dec 18 19:44:33 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="samtools" version="1.2">
-        <repository changeset_revision="192f00129358" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="a55970300738" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>