# HG changeset patch
# User iuc
# Date 1564339678 14400
# Node ID 5fd05c7b42f8ba52d9c8ad005920d52f7bb09b95
# Parent  5d3100bf5357f93fb32557eb30b935774989913f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit a972815cbd43dea553b3c0e4ad548f35d0023228-dirty

diff -r 5d3100bf5357 -r 5fd05c7b42f8 samtools_flagstat.xml
--- a/samtools_flagstat.xml	Thu Sep 27 08:57:38 2018 -0400
+++ b/samtools_flagstat.xml	Sun Jul 28 14:47:58 2019 -0400
@@ -9,7 +9,8 @@
     <expand macro="version_command"/>
 
     <command><![CDATA[
-        samtools flagstat '$input1' > '$output1'
+    @ADDTHREADS@
+    samtools flagstat -@ \$addthreads '$input1' > '$output1'
     ]]></command>
 
     <inputs>