Mercurial > repos > devteam > samtools_flagstat
diff test-data/samtools_flagstat_out1.txt @ 4:10b658bef71a draft
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author | devteam |
---|---|
date | Tue, 13 Oct 2015 12:54:34 -0400 |
parents | 480404be9626 |
children | 28eb6a47be96 |
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--- a/test-data/samtools_flagstat_out1.txt Fri Sep 26 14:35:56 2014 -0400 +++ b/test-data/samtools_flagstat_out1.txt Tue Oct 13 12:54:34 2015 -0400 @@ -1,13 +1,13 @@ -10 + 0 in total (QC-passed reads + QC-failed reads) +200 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 secondary -0 + 0 supplimentary +0 + 0 supplementary 0 + 0 duplicates -10 + 0 mapped (100.00%:-nan%) -0 + 0 paired in sequencing -0 + 0 read1 -0 + 0 read2 -0 + 0 properly paired (-nan%:-nan%) +25 + 0 mapped (12.50%:nan%) +200 + 0 paired in sequencing +100 + 0 read1 +100 + 0 read2 +0 + 0 properly paired (0.00%:nan%) 0 + 0 with itself and mate mapped -0 + 0 singletons (-nan%:-nan%) +25 + 0 singletons (12.50%:nan%) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)