Mercurial > repos > devteam > samtools_flagstat
comparison samtools_flagstat.xml @ 8:5fd05c7b42f8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit a972815cbd43dea553b3c0e4ad548f35d0023228-dirty
| author | iuc |
|---|---|
| date | Sun, 28 Jul 2019 14:47:58 -0400 |
| parents | 5d3100bf5357 |
| children | 5fbe9dcaef98 |
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| 7:5d3100bf5357 | 8:5fd05c7b42f8 |
|---|---|
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 8 <expand macro="stdio"/> | 8 <expand macro="stdio"/> |
| 9 <expand macro="version_command"/> | 9 <expand macro="version_command"/> |
| 10 | 10 |
| 11 <command><![CDATA[ | 11 <command><![CDATA[ |
| 12 samtools flagstat '$input1' > '$output1' | 12 @ADDTHREADS@ |
| 13 samtools flagstat -@ \$addthreads '$input1' > '$output1' | |
| 13 ]]></command> | 14 ]]></command> |
| 14 | 15 |
| 15 <inputs> | 16 <inputs> |
| 16 <param name="input1" type="data" format="sam,bam,cram" label="BAM File to report statistics of" /> | 17 <param name="input1" type="data" format="sam,bam,cram" label="BAM File to report statistics of" /> |
| 17 </inputs> | 18 </inputs> |