Mercurial > repos > devteam > samtools_flagstat

annotate test-data/samtools_flagstat_out1.txt @ 2:728e2ed819a1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded tool version 1.0.2, updated for samtools 1.0.
author devteam
date Wed, 24 Sep 2014 11:26:48 -0400
parents 1bbde47ebd2a
children 480404be9626
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
1 10 + 0 in total (QC-passed reads + QC-failed reads)
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
2 0 + 0 duplicates
2
728e2ed819a1 Uploaded tool version 1.0.2, updated for samtools 1.0.
devteam
parents: 0
diff changeset
3 10 + 0 mapped (100.00%:-nan%)
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
4 0 + 0 paired in sequencing
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
5 0 + 0 read1
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
6 0 + 0 read2
2
728e2ed819a1 Uploaded tool version 1.0.2, updated for samtools 1.0.
devteam
parents: 0
diff changeset
7 0 + 0 properly paired (-nan%:-nan%)
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
8 0 + 0 with itself and mate mapped
2
728e2ed819a1 Uploaded tool version 1.0.2, updated for samtools 1.0.
devteam
parents: 0
diff changeset
9 0 + 0 singletons (-nan%:-nan%)
0
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
10 0 + 0 with mate mapped to a different chr
1bbde47ebd2a Uploaded
devteam
parents:
diff changeset
11 0 + 0 with mate mapped to a different chr (mapQ>=5)