Mercurial > repos > devteam > sam_to_bam
comparison sam_to_bam.xml @ 6:a832dc88e7dc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit e2a10eeee8765ba6cf03847562e56cdaeaf4ba5c"
| author | iuc |
|---|---|
| date | Thu, 05 Sep 2019 19:30:35 -0400 |
| parents | 4afb4a5f0924 |
| children | 428d5c102c96 |
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| 5:d6181de75bdd | 6:a832dc88e7dc |
|---|---|
| 24 | 24 |
| 25 samtools sort | 25 samtools sort |
| 26 -O bam | 26 -O bam |
| 27 -@ \${GALAXY_SLOTS:-1} | 27 -@ \${GALAXY_SLOTS:-1} |
| 28 -o '$output1' | 28 -o '$output1' |
| 29 -T temp | 29 -T "\${TMPDIR:-.}" |
| 30 ]]></command> | 30 ]]></command> |
| 31 | 31 |
| 32 <inputs> | 32 <inputs> |
| 33 <conditional name="source"> | 33 <conditional name="source"> |
| 34 <param label="Choose the source for the reference genome" name="index_source" type="select"> | 34 <param label="Choose the source for the reference genome" name="index_source" type="select"> |