Mercurial > repos > devteam > sam2interval

diff sam2interval.xml @ 1:2c13da4885e2 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sam2interval commit 206cd8245e7619b0e924c5066d0172129222993d"
author devteam
date Wed, 05 Feb 2020 11:58:34 +0000
parents 71c1ee1ef131
children
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--- a/sam2interval.xml	Tue Aug 20 12:32:17 2013 -0400
+++ b/sam2interval.xml	Wed Feb 05 11:58:34 2020 +0000
@@ -1,6 +1,10 @@
-<tool id="sam2interval" name="Convert SAM" version="1.0.1">
+<tool id="sam2interval" name="Convert SAM" version="1.0.2" profile="16.04">
   <description>to interval</description>
-  <command interpreter="python">sam2interval.py --input_sam_file=$input1 $print_all > $out_file1
+  <requirements>
+    <requirement type="package" version="3.7">python</requirement>
+  </requirements>
+  <command>
+    python '$__tool_directory__/sam2interval.py' --input_sam_file='$input1' $print_all > '$out_file1'
   </command>
   <inputs>
     <param format="sam" name="input1" type="data" label="Select dataset to convert"/>