Mercurial > repos > devteam > sam2interval
comparison sam2interval.xml @ 1:2c13da4885e2 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sam2interval commit 206cd8245e7619b0e924c5066d0172129222993d"
| author | devteam |
|---|---|
| date | Wed, 05 Feb 2020 11:58:34 +0000 |
| parents | 71c1ee1ef131 |
| children |
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| 0:71c1ee1ef131 | 1:2c13da4885e2 |
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| 1 <tool id="sam2interval" name="Convert SAM" version="1.0.1"> | 1 <tool id="sam2interval" name="Convert SAM" version="1.0.2" profile="16.04"> |
| 2 <description>to interval</description> | 2 <description>to interval</description> |
| 3 <command interpreter="python">sam2interval.py --input_sam_file=$input1 $print_all > $out_file1 | 3 <requirements> |
| 4 <requirement type="package" version="3.7">python</requirement> | |
| 5 </requirements> | |
| 6 <command> | |
| 7 python '$__tool_directory__/sam2interval.py' --input_sam_file='$input1' $print_all > '$out_file1' | |
| 4 </command> | 8 </command> |
| 5 <inputs> | 9 <inputs> |
| 6 <param format="sam" name="input1" type="data" label="Select dataset to convert"/> | 10 <param format="sam" name="input1" type="data" label="Select dataset to convert"/> |
| 7 <param name="print_all" type="select" label="Print all?" help="Do you want to retain original SAM fields? See example below."> | 11 <param name="print_all" type="select" label="Print all?" help="Do you want to retain original SAM fields? See example below."> |
| 8 <option value="-p">Yes</option> | 12 <option value="-p">Yes</option> |