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annotate tool-data/faseq.loc.sample @ 0:a0c8173dbdc9 draft

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Imported from capsule None
author devteam
date Mon, 19 May 2014 10:59:29 -0400
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1 #This is a sample file distributed with Galaxy that enables tools
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2 #to use genome fasta sequence files. The faseq.loc file has this format
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3 #(white space characters are TAB characters):
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4 #
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5 # <GenomeBuild> <dir>
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6 #
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7 # In the dir, each file is fasta format and contains only one sequence. So,
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8 #for example, if you had hg18 fasta sequences stored in /depot/data2/galaxy/faseq/hg18,
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9 #then your faseq.loc entry would look like this:
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10 #
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11 #hg18 /depot/data2/galaxy/faseq/hg18
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12 #
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13 #and your /depot/data2/galaxy/faseq/hg18 directory would contain all of
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14 #your fasta sequence files (e.g.):
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15 #
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16 #-rw-r--r-- 1 wychung galaxy 138082251 2008-04-16 11:57 chr10.fa
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17 #-rw-r--r-- 1 wychung galaxy 115564 2008-04-16 11:57 chr10_random.fa
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18 #-rw-r--r-- 1 wychung galaxy 137141451 2008-04-16 11:58 chr11.fa
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19 #...etc...
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20 #Your faseq.loc file should include an entry per line for each set of fasta
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21 #sequence files you have stored. For example:
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22 #
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23 #hg18 /depot/data2/galaxy/faseq/hg18
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24 #mm9 /depot/data2/galaxy/faseq/mm9
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25 #Arabidopsis /depot/data2/galaxy/faseq/Arabidopsis
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26 #...etc...