Mercurial > repos > devteam > picard1106
changeset 60:5de8c5774a10 draft
Uploaded
| author | devteam |
|---|---|
| date | Tue, 18 Feb 2014 15:57:17 -0500 |
| parents | a37c29f865f7 |
| children | b5063e189f57 |
| files | test-data/cleansamtestoutput.sam |
| diffstat | 1 files changed, 19 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cleansamtestoutput.sam Tue Feb 18 15:57:17 2014 -0500 @@ -0,0 +1,19 @@ +@HD VN:1.4 SO:coordinate +@SQ SN:chr1 LN:101 UR:file:/home/dorine/galaxypicard/galaxy-central/database/files/000/dataset_207.dat.fasta M5:bd01f7e11515bb6beda8f7257902aa67 +@SQ SN:chr2 LN:101 UR:file:/home/dorine/galaxypicard/galaxy-central/database/files/000/dataset_207.dat.fasta M5:31c33e2155b3de5e2554b693c475b310 +@SQ SN:chr3 LN:101 UR:file:/home/dorine/galaxypicard/galaxy-central/database/files/000/dataset_207.dat.fasta M5:631593c6dd2048ae88dcce2bd505d295 +@SQ SN:chr4 LN:101 UR:file:/home/dorine/galaxypicard/galaxy-central/database/files/000/dataset_207.dat.fasta M5:c60cb92f1ee5b78053c92bdbfa19abf1 +@SQ SN:chr5 LN:101 UR:file:/home/dorine/galaxypicard/galaxy-central/database/files/000/dataset_207.dat.fasta M5:07ebc213c7611db0eacbb1590c3e9bda +@SQ SN:chr6 LN:101 UR:file:/home/dorine/galaxypicard/galaxy-central/database/files/000/dataset_207.dat.fasta M5:7be2f5e7ee39e60a6c3b5b6a41178c6d +@SQ SN:chr7 LN:404 UR:file:/home/dorine/galaxypicard/galaxy-central/database/files/000/dataset_207.dat.fasta M5:da488fc432cdaf2c20c96da473a7b630 +@SQ SN:chr8 LN:202 UR:file:/home/dorine/galaxypicard/galaxy-central/database/files/000/dataset_207.dat.fasta M5:d339678efce576d5546e88b49a487b63 +@RG ID:0 SM:Hi,Mom! +@PG ID:1 PN:Hey! VN:2.0 +both_reads_present_only_first_aligns 165 chr7 1 0 * = 1 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 PG:Z:1 RG:Z:0 +read_2_too_many_gaps 165 chr7 1 0 * = 1 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 PG:Z:1 RG:Z:0 +both_reads_present_only_first_aligns 89 chr7 1 255 101M = 1 0 NTTGGGAGGTNAGCTGCGGAANGAAATCGGGATNNNNNNNNGANNCGANAANCNNTTCAGCAGGAAATCCGAAACACAAACACAGATNCCNGCTTCTGTTG &/86863//382/2/*0*/6/&&06410,/23/&&&&&&&&*0&&&)-&&.&,&&*.).,./.)..&&-/,)&)&)-.&)-*&-)/*&'&&)),2+.*.') PG:Z:1 RG:Z:0 NM:i:81 UQ:i:838 +read_2_too_many_gaps 89 chr7 1 255 101M = 1 0 NTTGGGAGGTNAGCTGCGGAANGAAATCGGGATNNNNNNNNGANNCGANAANCNNTTCAGCAGGAAATCCGAAACACAAACACAGATNCCNGCTTCTGTTG &/86863//382/2/*0*/6/&&06410,/23/&&&&&&&&*0&&&)-&&.&,&&*.).,./.)..&&-/,)&)&)-.&)-*&-)/*&'&&)),2+.*.') PG:Z:1 RG:Z:0 NM:i:81 UQ:i:838 +both_reads_align_clip_marked 81 chr7 6 255 5S96M = 302 202 NTTGGGAGGTNAGCTGCGGAANGAAATCGGGATNNNNNNNNGANNCGANAANCNNTTCAGCAGGAAATCCGAAACACAAACACAGATNCCNGCTTCTGTTG &/86863//382/2/*0*/6/&&06410,/23/&&&&&&&&*0&&&)-&&.&,&&*.).,./.)..&&-/,)&)&)-.&)-*&-)/*&'&&)),2+.*.') PG:Z:1 RG:Z:0 NM:i:76 MQ:i:255 UQ:i:752 XT:i:97 +both_reads_align_clip_adapter 99 chr7 21 255 96M5S = 21 96 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& PG:Z:1 RG:Z:0 NM:i:72 MQ:i:255 UQ:i:725 +both_reads_align_clip_adapter 147 chr7 21 255 5S96M = 21 -96 TGTATGCTCTNGCCGCACGACAAGATGTACCATAATAACCTACACGACGCGCTGCCGATCTGTCGGGAGGTTAGCTGCGGAAAGAAATCGNGATGCCGCGN 1'1/.-&)*&&-&*/+&+2'&)++5*&+3/))'/''++//')3+31''*))+*'-&-/'-)/3+215555/&/41/2+355666665/15666654451/& PG:Z:1 RG:Z:0 NM:i:64 MQ:i:255 UQ:i:824 +both_reads_align_clip_marked 161 chr7 302 255 96M5S = 6 -202 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 PG:Z:1 RG:Z:0 NM:i:63 MQ:i:255 UQ:i:818 XT:i:97