# HG changeset patch # User devteam # Date 1390523536 18000 # Node ID 3a18b0c7aa7d831057125dbd70d783c5ee6e015a # Parent 86e7e072c4c9f402753b6e4cf3149bd5f0704cc5 Uploaded diff -r 86e7e072c4c9 -r 3a18b0c7aa7d picard_CleanSam.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/picard_CleanSam.xml Thu Jan 23 19:32:16 2014 -0500 @@ -0,0 +1,31 @@ + + + Read SAM and perform various fix-ups. + + picard + + + cleansamwrapper.sh $input1 $output1 + + + + + + + + + + + + + + +**What it does** + +Read SAM and perform various fix-ups. Currently, the only fix-up it to soft-clip an alignment that hangs off the end of its reference sequence. + + + + \ No newline at end of file