Mercurial > repos > devteam > picard1106
view mergebamalignment_wrapper.sh @ 151:fe8432b20247 draft
merged
author | Rayan Chikhi <chikhi@psu.edu> |
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date | Mon, 21 Jul 2014 16:32:08 -0400 |
parents | 11e69ba20b85 |
children |
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#!/bin/bash reference_without_extension=${3%.*} java -jar $JAVA_JAR_PATH/CreateSequenceDictionary.jar R=$3 O=$reference_without_extension.dict eval java -Xmx2G -jar $JAVA_JAR_PATH/MergeBamAlignment.jar O=$1.$2 R=$3 ${*:4} mv $1.$2 $1