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fixed downsample sam in picard1106 (accept bam)
author Rayan Chikhi <chikhi@psu.edu>
date Mon, 16 Jun 2014 17:38:15 -0400
parents 8b335563c71a
children
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java -jar $JAVA_JAR_PATH/CleanSam.jar QUIET=True INPUT=$1 OUTPUT=$2.sam
mv $2.sam $2