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view cleansamwrapper.sh @ 147:6a9f7fd3d6b6 draft

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merged
author Rayan Chikhi <chikhi@psu.edu>
date Mon, 21 Jul 2014 15:25:16 -0400
parents 8b335563c71a
children
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java -jar $JAVA_JAR_PATH/CleanSam.jar QUIET=True INPUT=$1 OUTPUT=$2.sam
mv $2.sam $2