diff test-data/picard_MD_output1.txt @ 49:2bfb9ce28275 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picard_MD_output1.txt	Mon Feb 17 00:02:22 2014 -0500
@@ -0,0 +1,112 @@
+## net.sf.picard.metrics.StringHeader
+# net.sf.picard.sam.MarkDuplicates INPUT=picard_input_tiny_coord.bam OUTPUT=picard_MD_output2.bam METRICS_FILE=picard_MD_output1.txt REMOVE_DUPLICATES=false ASSUME_SORTED=true READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VALIDATION_STRINGENCY=LENIENT    MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 TMP_DIR=/tmp/kpvincent VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
+## net.sf.picard.metrics.StringHeader
+# Started on: Tue Apr 19 15:28:21 EDT 2011
+
+## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
+LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
+	1	3	1	1	1	0	0.428571	3
+
+## HISTOGRAM	java.lang.Double
+BIN	VALUE
+1.0	0.948181
+2.0	1.296997
+3.0	1.425319
+4.0	1.472527
+5.0	1.489893
+6.0	1.496282
+7.0	1.498632
+8.0	1.499497
+9.0	1.499815
+10.0	1.499932
+11.0	1.499975
+12.0	1.499991
+13.0	1.499997
+14.0	1.499999
+15.0	1.5
+16.0	1.5
+17.0	1.5
+18.0	1.5
+19.0	1.5
+20.0	1.5
+21.0	1.5
+22.0	1.5
+23.0	1.5
+24.0	1.5
+25.0	1.5
+26.0	1.5
+27.0	1.5
+28.0	1.5
+29.0	1.5
+30.0	1.5
+31.0	1.5
+32.0	1.5
+33.0	1.5
+34.0	1.5
+35.0	1.5
+36.0	1.5
+37.0	1.5
+38.0	1.5
+39.0	1.5
+40.0	1.5
+41.0	1.5
+42.0	1.5
+43.0	1.5
+44.0	1.5
+45.0	1.5
+46.0	1.5
+47.0	1.5
+48.0	1.5
+49.0	1.5
+50.0	1.5
+51.0	1.5
+52.0	1.5
+53.0	1.5
+54.0	1.5
+55.0	1.5
+56.0	1.5
+57.0	1.5
+58.0	1.5
+59.0	1.5
+60.0	1.5
+61.0	1.5
+62.0	1.5
+63.0	1.5
+64.0	1.5
+65.0	1.5
+66.0	1.5
+67.0	1.5
+68.0	1.5
+69.0	1.5
+70.0	1.5
+71.0	1.5
+72.0	1.5
+73.0	1.5
+74.0	1.5
+75.0	1.5
+76.0	1.5
+77.0	1.5
+78.0	1.5
+79.0	1.5
+80.0	1.5
+81.0	1.5
+82.0	1.5
+83.0	1.5
+84.0	1.5
+85.0	1.5
+86.0	1.5
+87.0	1.5
+88.0	1.5
+89.0	1.5
+90.0	1.5
+91.0	1.5
+92.0	1.5
+93.0	1.5
+94.0	1.5
+95.0	1.5
+96.0	1.5
+97.0	1.5
+98.0	1.5
+99.0	1.5
+100.0	1.5
+