Mercurial > repos > devteam > picard1106

diff cleansamwrapper.sh @ 50:1a2500b0df93 draft

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author devteam
date Mon, 17 Feb 2014 00:03:05 -0500
parents 8b335563c71a
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cleansamwrapper.sh	Mon Feb 17 00:03:05 2014 -0500
@@ -0,0 +1,2 @@
+java -jar $JAVA_JAR_PATH/CleanSam.jar QUIET=True INPUT=$1 OUTPUT=$2.sam
+mv $2.sam $2
\ No newline at end of file