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comparison picard_ReplaceSamHeader.xml @ 43:c810e9bc55af draft

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author devteam
date Thu, 13 Feb 2014 22:14:53 -0500
parents 67d9a5a686ec
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42:c25cd3e674a5 43:c810e9bc55af
1 <tool name="Replace SAM/BAM Header" id="picard_ReplaceSamHeader" version="1.106.0"> 1 <tool name="Replace SAM/BAM Header" id="picard_ReplaceSamHeader" version="1.106.0">
2 <!-- taken from https://github.com/najoshi/ucd-biocore-galaxy/blob/master/tools/picard/picard_ReplaceSamHeader.xml --> 2 <!-- taken from https://github.com/najoshi/ucd-biocore-galaxy/blob/master/tools/picard/picard_ReplaceSamHeader.xml -->
3 <requirements><requirement type="package">picard</requirement></requirements> 3 <requirements><requirement type="package" version="1.106.0">picard</requirement></requirements>
4 <command interpreter="python"> 4 <command interpreter="python">
5 picard_wrapper.py 5 picard_wrapper.py
6 --input "$inputFile" 6 --input "$inputFile"
7 -o $outFile 7 -o $outFile
8 --header-file $headerFile 8 --header-file $headerFile