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comparison picard_ReorderSam.xml @ 43:c810e9bc55af draft

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author devteam
date Thu, 13 Feb 2014 22:14:53 -0500
parents 468673afa348
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42:c25cd3e674a5 43:c810e9bc55af
1 <tool name="Reorder SAM/BAM" id="picard_ReorderSam" version="1.106.0"> 1 <tool name="Reorder SAM/BAM" id="picard_ReorderSam" version="1.106.0">
2 <!-- taken from Inserthttps://github.com/najoshi/ucd-biocore-galaxy/tree/master/tools/picard --> 2 <!-- taken from Inserthttps://github.com/najoshi/ucd-biocore-galaxy/tree/master/tools/picard -->
3 <requirements><requirement type="package">picard</requirement></requirements> 3 <requirements><requirement type="package" version="1.106.0">picard</requirement></requirements>
4 <command interpreter="python"> 4 <command interpreter="python">
5 picard_wrapper.py 5 picard_wrapper.py
6 --input=$inputFile 6 --input=$inputFile
7 #if $source.indexSource == "built-in" 7 #if $source.indexSource == "built-in"
8 --ref="${source.ref.fields.path}" 8 --ref="${source.ref.fields.path}"