Mercurial > repos > devteam > picard1106
comparison picard_CollectAlignmentSummaryMetrics.xml @ 146:767bcb0a06df draft
fixed downsamplesam
| author | Rayan Chikhi <chikhi@psu.edu> |
|---|---|
| date | Mon, 21 Jul 2014 15:24:40 -0400 |
| parents | e18ad84f747a |
| children |
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| 143:b2ca2d181fb4 | 146:767bcb0a06df |
|---|---|
| 58 <param name="sorted" value="true" /> | 58 <param name="sorted" value="true" /> |
| 59 <param name="adaptors" value="" /> | 59 <param name="adaptors" value="" /> |
| 60 <param name="maxinsert" value="100000" /> | 60 <param name="maxinsert" value="100000" /> |
| 61 <param name="refGenomeSource" value="history" /> | 61 <param name="refGenomeSource" value="history" /> |
| 62 <param name="ownFile" value="picard_input_hg18.trimmed.fasta" /> | 62 <param name="ownFile" value="picard_input_hg18.trimmed.fasta" /> |
| 63 <param name="input_file" value="picard_input_tiny.sam" dbkey="hg18" /> | 63 <param name="input_file" value="picard_input_tiny.sam" dbkey="hg18" ftype="sam" /> |
| 64 <output name="html_file" file="picard_output_alignment_summary_metrics.html" ftype="html" lines_diff="55"/> | 64 <output name="html_file" file="picard_output_alignment_summary_metrics.html" ftype="html" lines_diff="55"/> |
| 65 </test> | 65 </test> |
| 66 <test> | 66 <test> |
| 67 <param name="out_prefix" value="AsMetricsIndexed" /> | 67 <param name="out_prefix" value="AsMetricsIndexed" /> |
| 68 <param name="bisulphite" value="false" /> | 68 <param name="bisulphite" value="false" /> |
| 69 <param name="sorted" value="true" /> | 69 <param name="sorted" value="true" /> |
| 70 <param name="adaptors" value="" /> | 70 <param name="adaptors" value="" /> |
| 71 <param name="maxinsert" value="100000" /> | 71 <param name="maxinsert" value="100000" /> |
| 72 <param name="refGenomeSource" value="indexed" /> | 72 <param name="refGenomeSource" value="indexed" /> |
| 73 <param name="index" value="hg19" /> | 73 <param name="index" value="hg19" /> |
| 74 <param name="input_file" value="picard_input_sorted_pair.sam" dbkey="hg19" /> | 74 <param name="input_file" value="picard_input_sorted_pair.sam" dbkey="hg19" ftype="sam" /> |
| 75 <output name="html_file" file="picard_output_AsMetrics_indexed_hg18_sorted_pair.html" ftype="html" lines_diff="50"/> | 75 <output name="html_file" file="picard_output_AsMetrics_indexed_hg18_sorted_pair.html" ftype="html" lines_diff="50"/> |
| 76 </test> | 76 </test> |
| 77 </tests> | 77 </tests> |
| 78 <help> | 78 <help> |
| 79 | 79 |