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annotate cleansamwrapper.sh @ 151:fe8432b20247 draft

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merged
author Rayan Chikhi <chikhi@psu.edu>
date Mon, 21 Jul 2014 16:32:08 -0400
parents 8b335563c71a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8b335563c71a Uploaded
devteam
parents:
diff changeset
1 java -jar $JAVA_JAR_PATH/CleanSam.jar QUIET=True INPUT=$1 OUTPUT=$2.sam
8b335563c71a Uploaded
devteam
parents:
diff changeset
2 mv $2.sam $2