Mercurial > repos > devteam > picard1106
annotate tool_dependencies.xml @ 143:b2ca2d181fb4 draft
fixed downsample sam in picard1106 (accept bam)
| author | Rayan Chikhi <chikhi@psu.edu> |
|---|---|
| date | Mon, 16 Jun 2014 17:38:15 -0400 |
| parents | 48b3fe273456 |
| children |
| rev | line source |
|---|---|
| 5 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="picard" version="1.106.0"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.106/picard-tools-1.106.zip</action> | |
| 7 <action type="move_directory_files"> | |
| 8 <source_directory>picard-tools-1.106</source_directory> | |
| 9 <destination_directory>$INSTALL_DIR/jars</destination_directory> | |
| 10 </action> | |
| 11 <action type="set_environment"> | |
| 12 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable> | |
| 13 </action> | |
| 14 </actions> | |
| 15 </install> | |
| 16 <readme> | |
| 17 </readme> | |
| 18 </package> | |
| 19 </tool_dependency> |