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annotate normalizefasta_wrapper.sh @ 143:b2ca2d181fb4 draft

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fixed downsample sam in picard1106 (accept bam)
author Rayan Chikhi <chikhi@psu.edu>
date Mon, 16 Jun 2014 17:38:15 -0400
parents 4109d3f92a8b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
90
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1 #!/bin/bash
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2 cp $2 $2.fasta
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3 eval java -jar $JAVA_JAR_PATH/$1 INPUT=$2.fasta ${*:3}
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4 rm -f $2.fasta