Mercurial > repos > devteam > picard1106

annotate generic_outformat_wrapper.sh @ 143:b2ca2d181fb4 draft

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fixed downsample sam in picard1106 (accept bam)
author Rayan Chikhi <chikhi@psu.edu>
date Mon, 16 Jun 2014 17:38:15 -0400
parents 6c17c441f8cd
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
106
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1 #!/bin/bash
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2 eval java -Xmx2G -jar $JAVA_JAR_PATH/$1.jar O=$2.$3 ${*:4} 2>&1
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3 mv $2.$3 $2