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annotate cleansamwrapper.sh @ 72:5988c94a8f13 draft

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author devteam
date Wed, 19 Feb 2014 18:04:16 -0500
parents 8b335563c71a
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
8b335563c71a Uploaded
devteam
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1 java -jar $JAVA_JAR_PATH/CleanSam.jar QUIET=True INPUT=$1 OUTPUT=$2.sam
8b335563c71a Uploaded
devteam
parents:
diff changeset
2 mv $2.sam $2