Mercurial > repos > devteam > picard
view test-data/picard_QualityScoreDistribution_test1.tab @ 15:a5a13ea16d17 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author | iuc |
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date | Tue, 19 Jun 2018 11:28:30 -0400 |
parents | 486d7500da69 |
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## htsjdk.samtools.metrics.StringHeader # QualityScoreDistribution CHART_OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_85.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INCLUDE_NO_CALLS=false INPUT=picard_QualityScoreDistribution_bam OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_84.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false ## htsjdk.samtools.metrics.StringHeader # Started on: Sat Apr 14 09:35:07 CEST 2018 ## HISTOGRAM java.lang.Byte QUALITY COUNT_OF_Q 6 704 7 2044 8 745 9 2761 10 1193 11 723 12 1766 13 1467 14 1400 15 1463 16 478 17 831 18 330 19 904 20 1538 21 2953 22 565 23 4270 24 1496 25 5178 26 3992 27 3779 28 3074 29 2909 30 19446 31 3520 32 13368 33 9203 34 22271 35 24655 36 64306 37 38212 38 95777 39 67370 40 36926