Mercurial > repos > devteam > picard
view test-data/picard_CollectInsertSizeMetrics_test1.tab @ 5:2f3cdd537834 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 6e148b31fed1b322ce720804d8525088ec6d43f9
author | devteam |
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date | Thu, 29 Oct 2015 22:23:28 -0400 |
parents | 52fdfc45590a |
children | 486d7500da69 |
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## htsjdk.samtools.metrics.StringHeader # picard.analysis.CollectInsertSizeMetrics HISTOGRAM_FILE=/Users/anton/galaxy-central/database/files/000/dataset_699.dat DEVIATIONS=10.0 HISTOGRAM_WIDTH=500 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_698.dat REFERENCE_SEQUENCE=/Users/anton/temp/mt.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## htsjdk.samtools.metrics.StringHeader # Started on: Sat Oct 04 10:14:44 EDT 2014 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 200 28 112 251 193.969697 36.171207 99 FR 7 15 33 43 57 73 83 99 125 177 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 112 1 120 1 132 2 134 2 138 5 139 1 140 1 141 1 151 2 156 4 157 1 159 1 161 2 169 1 172 1 173 1 177 3 179 3 182 3 184 4 185 2 187 1 192 1 193 1 194 3 200 2 201 5 203 8 205 1 208 1 213 4 216 1 222 1 228 5 229 2 230 1 231 3 233 1 236 2 238 2 241 4 242 3 250 2 251 3