Mercurial > repos > devteam > picard

diff tool_dependencies.xml @ 0:ff4ec13e496e draft

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author devteam
date Tue, 23 Oct 2012 10:49:35 -0400
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children ab5e8beab4fe
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Oct 23 10:49:35 2012 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="picard" version="1.56.0">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">mkdir picard</action>
+                <action type="shell_command">wget --quiet -O picard-tools-1.56.zip http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action>
+                <action type="shell_command">unzip picard-tools-1.56.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>picard-tools-1.56</source_directory>
+                    <destination_directory>$INSTALL_DIR/jars</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>