Mercurial > repos > devteam > picard
diff test-data/picard_output_gc_summary_alignment_stats.txt @ 0:ff4ec13e496e draft
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| author | devteam |
|---|---|
| date | Tue, 23 Oct 2012 10:49:35 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picard_output_gc_summary_alignment_stats.txt Tue Oct 23 10:49:35 2012 -0400 @@ -0,0 +1,102 @@ +## net.sf.picard.metrics.StringHeader +# net.sf.picard.analysis.CollectGcBiasMetrics REFERENCE_SEQUENCE=testdata/picard/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta INPUT=testdata/picard/sam/summary_alignment_stats_test.sam OUTPUT=output_test_gc_nodict/test_nodic_ref_gc_summary_alignment_stats_test.txt CHART_OUTPUT=output_test_gc_nodict/test_nodic_ref_gc_summary_alignment_stats_test.pdf WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=1.0E-5 TMP_DIR=/tmp/raphael VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false +## net.sf.picard.metrics.StringHeader +# Started on: Tue Oct 26 13:54:53 EDT 2010 + +## METRICS CLASS net.sf.picard.analysis.GcBiasDetailMetrics +GC WINDOWS READ_STARTS MEAN_BASE_QUALITY NORMALIZED_COVERAGE ERROR_BAR_WIDTH +6 3 0 0 0 0 +7 7 0 0 0 0 +8 6 0 0 0 0 +9 45 0 0 0 0 +10 54 0 0 0 0 +11 83 0 0 0 0 +12 110 0 0 0 0 +13 83 0 0 0 0 +14 130 0 0 0 0 +15 178 0 0 0 0 +16 276 0 0 0 0 +17 352 0 0 0 0 +18 519 0 0 0 0 +19 658 0 0 0 0 +20 1073 0 0 0 0 +21 1543 0 0 0 0 +22 2024 0 0 0 0 +23 2631 0 0 0 0 +24 3758 0 0 0 0 +25 5087 0 0 0 0 +26 6543 0 0 0 0 +27 8020 0 0 0 0 +28 10251 0 0 0 0 +29 12241 0 0 0 0 +30 14189 0 0 0 0 +31 16295 0 0 0 0 +32 17995 0 0 0 0 +33 20131 0 0 0 0 +34 22194 0 0 0 0 +35 23848 0 0 0 0 +36 25355 0 0 0 0 +37 27310 0 0 0 0 +38 28274 0 0 0 0 +39 28818 0 0 0 0 +40 28806 0 0 0 0 +41 29651 0 0 0 0 +42 30773 0 0 0 0 +43 31217 0 0 0 0 +44 31743 0 0 0 0 +45 32727 0 0 0 0 +46 34084 0 0 0 0 +47 35307 0 0 0 0 +48 36752 0 0 0 0 +49 36917 0 0 0 0 +50 36561 0 0 0 0 +51 36399 0 0 0 0 +52 35677 0 0 0 0 +53 34354 1 1 29.352448 29.352448 +54 32401 0 0 0 0 +55 30417 0 0 0 0 +56 28588 0 0 0 0 +57 27083 0 0 0 0 +58 24090 0 0 0 0 +59 20995 0 0 0 0 +60 17702 0 0 0 0 +61 14252 0 0 0 0 +62 11595 0 0 0 0 +63 9077 0 0 0 0 +64 6863 0 0 0 0 +65 5394 0 0 0 0 +66 4304 0 0 0 0 +67 3551 0 0 0 0 +68 2776 0 0 0 0 +69 2321 0 0 0 0 +70 1999 0 0 0 0 +71 1777 0 0 0 0 +72 1444 0 0 0 0 +73 1367 0 0 0 0 +74 1182 0 0 0 0 +75 975 0 0 0 0 +76 807 0 0 0 0 +77 852 0 0 0 0 +78 867 0 0 0 0 +79 925 0 0 0 0 +80 786 0 0 0 0 +81 762 0 0 0 0 +82 578 0 0 0 0 +83 475 0 0 0 0 +84 391 0 0 0 0 +85 219 0 0 0 0 +86 184 0 0 0 0 +87 75 0 0 0 0 +88 36 0 0 0 0 +89 37 0 0 0 0 +90 24 0 0 0 0 +91 40 0 0 0 0 +92 33 0 0 0 0 +93 11 0 0 0 0 +94 24 0 0 0 0 +95 12 0 0 0 0 +96 11 0 0 0 0 +97 11 0 0 0 0 +98 9 0 0 0 0 + +