diff picard_CollectAlignmentSummaryMetrics.xml @ 27:fdca9493e09b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 70d2a66c405be58d4413753792bcadf212a4da84

--- a/picard_CollectAlignmentSummaryMetrics.xml	Mon Aug 22 09:54:37 2022 +0000
+++ b/picard_CollectAlignmentSummaryMetrics.xml	Sat Feb 25 20:32:54 2023 +0000
@@ -2,7 +2,7 @@
   <description>writes a file containing summary alignment metrics</description>
   <macros>
     <import>picard_macros.xml</import>
-    <token name="@WRAPPER_VERSION@">1</token>
+    <token name="@WRAPPER_VERSION@">2</token>
   </macros>
   <expand macro="requirements" />
   <command detect_errors="exit_code"><![CDATA[
@@ -71,13 +71,15 @@
 
   </inputs>
   <outputs>
-    <data format="tabular" name="outFile" label="${tool.name} on ${on_string}: Summary stats"/>
+    <data format="tabular" name="outFile" label="${tool.name} on ${on_string}: tablular"/>
   </outputs>
   <tests>
     <test>
       <param name="bisulphite" value="false" />
-      <param name="sorted" value="true" />
-      <param name="adaptors" value="" />
+      <param name="assume_sorted" value="true" />
+      <repeat name="adapters">
+        <param name="adapter" value = ""/>
+      </repeat>
       <param name="maxinsert" value="100000" />
       <param name="reference_source_selector" value="history" />
       <param name="ref_file" value="picard_CASM_ref.fa" />