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diff picard_ValidateSamFile.xml @ 26:fc3866ddc7b6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 0244aa33464cc27d1ce881cb310b8eda36e9a89c
author iuc
date Mon, 22 Aug 2022 09:54:37 +0000
parents e65f2d5fd3d8
children c943f4a04af0
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line diff
--- a/picard_ValidateSamFile.xml	Sun Mar 20 14:05:27 2022 +0000
+++ b/picard_ValidateSamFile.xml	Mon Aug 22 09:54:37 2022 +0000
@@ -2,7 +2,7 @@
   <description>assess validity of SAM/BAM dataset</description>
   <macros>
     <import>picard_macros.xml</import>
-    <token name="@WRAPPER_VERSION@">1</token>
+    <token name="@WRAPPER_VERSION@">2</token>
   </macros>
   <expand macro="requirements" />
   <stdio>
@@ -45,6 +45,7 @@
     REFERENCE_SEQUENCE="${reference_fasta_filename}"
     IGNORE_WARNINGS="${ignore_warnings}"
     IS_BISULFITE_SEQUENCED="${is_bisulfite_sequenced}"
+    VALIDATE_INDEX="${validate_index}"
     MAX_OPEN_TEMP_FILES=`ulimit -Sn`
 
     VERBOSITY=ERROR