Mercurial > repos > devteam > picard

diff picard_CollectSequencingArtifactsMetrics.xml @ 26:fc3866ddc7b6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 0244aa33464cc27d1ce881cb310b8eda36e9a89c
author iuc
date Mon, 22 Aug 2022 09:54:37 +0000
parents f8748e3fd865
children
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--- a/picard_CollectSequencingArtifactsMetrics.xml	Sun Mar 20 14:05:27 2022 +0000
+++ b/picard_CollectSequencingArtifactsMetrics.xml	Mon Aug 22 09:54:37 2022 +0000
@@ -2,7 +2,7 @@
   <description>Collect metrics to quantify single-base sequencing artifacts</description>
   <macros>
     <import>picard_macros.xml</import>
-    <token name="@WRAPPER_VERSION@">1</token>
+    <token name="@WRAPPER_VERSION@">2</token>
   </macros>
   <expand macro="requirements">
     <requirement type="package" version="3.4.1">r-base</requirement>
@@ -31,7 +31,8 @@
     INCLUDE_UNPAIRED='${unpaired}'
     MAXIMUM_INSERT_SIZE='${max_size}'
     MINIMUM_INSERT_SIZE='${min_size}'
-    MINIMUM_MAPPING_QUALITY='${minim_map_quality}';
+    MINIMUM_MAPPING_QUALITY='${minim_map_quality}'
+    VALIDATION_STRINGENCY='${validation_stringency}';
   ]]></command>  
   <inputs>
     <param name='inputFile' format="sam,bam" type='data' label='SAM/BAM Input file'/>