Mercurial > repos > devteam > picard

diff picard_ValidateSamFile.xml @ 8:e417b1d6288d draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit bf94a1505c131fb3f67c867b6e1d886780efa42e
author: devteam
date: Tue, 06 Dec 2016 10:04:26 -0500
parents: 08f69add4d06
children: 41b8d087a2d2
--- a/picard_ValidateSamFile.xml	Sun Nov 27 15:11:36 2016 -0500
+++ b/picard_ValidateSamFile.xml	Tue Dec 06 10:04:26 2016 -0500
@@ -16,7 +16,7 @@
     &&
 
     ##set up input files
-
+    @symlink_element_identifier@
     #set $reference_fasta_filename = "localref.fa"
 
     #if str( $reference_source.reference_source_selector ) == "history":
@@ -30,7 +30,7 @@
     picard
     ValidateSamFile
 
-    INPUT="${inputFile}"
+    INPUT='$inputFile.element_identifier'
     OUTPUT="${outFile}"
     MODE="${mode}"