Mercurial > repos > devteam > picard
diff test-data/picard_CollectWgsMetrics_test1.tab @ 3:52fdfc45590a draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
| author | devteam |
|---|---|
| date | Thu, 16 Jul 2015 15:32:31 -0400 |
| parents | |
| children | 08f69add4d06 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picard_CollectWgsMetrics_test1.tab Thu Jul 16 15:32:31 2015 -0400 @@ -0,0 +1,263 @@ +## htsjdk.samtools.metrics.StringHeader +# picard.analysis.CollectWgsMetrics INPUT=/Users/anton/galaxy-central/database/files/000/dataset_773.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_802.dat REFERENCE_SEQUENCE=localref.fa MINIMUM_MAPPING_QUALITY=20 MINIMUM_BASE_QUALITY=20 COVERAGE_CAP=250 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=-1 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false +## htsjdk.samtools.metrics.StringHeader +# Started on: Tue Oct 07 15:46:29 EDT 2014 + +## METRICS CLASS picard.analysis.CollectWgsMetrics$WgsMetrics +GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X +16568 2.915983 3.836089 2 2 0 0 0 0 0.008069 0 0.008069 0.240464 0.055831 0.02541 0.011045 0 0 0 0 0 0 0 0 0 + +## HISTOGRAM java.lang.Integer +coverage count +0 5225 +1 3010 +2 1806 +3 1333 +4 1210 +5 1247 +6 672 +7 468 +8 361 +9 311 +10 210 +11 95 +12 78 +13 52 +14 69 +15 64 +16 29 +17 31 +18 53 +19 61 +20 65 +21 74 +22 32 +23 12 +24 0 +25 0 +26 0 +27 0 +28 0 +29 0 +30 0 +31 0 +32 0 +33 0 +34 0 +35 0 +36 0 +37 0 +38 0 +39 0 +40 0 +41 0 +42 0 +43 0 +44 0 +45 0 +46 0 +47 0 +48 0 +49 0 +50 0 +51 0 +52 0 +53 0 +54 0 +55 0 +56 0 +57 0 +58 0 +59 0 +60 0 +61 0 +62 0 +63 0 +64 0 +65 0 +66 0 +67 0 +68 0 +69 0 +70 0 +71 0 +72 0 +73 0 +74 0 +75 0 +76 0 +77 0 +78 0 +79 0 +80 0 +81 0 +82 0 +83 0 +84 0 +85 0 +86 0 +87 0 +88 0 +89 0 +90 0 +91 0 +92 0 +93 0 +94 0 +95 0 +96 0 +97 0 +98 0 +99 0 +100 0 +101 0 +102 0 +103 0 +104 0 +105 0 +106 0 +107 0 +108 0 +109 0 +110 0 +111 0 +112 0 +113 0 +114 0 +115 0 +116 0 +117 0 +118 0 +119 0 +120 0 +121 0 +122 0 +123 0 +124 0 +125 0 +126 0 +127 0 +128 0 +129 0 +130 0 +131 0 +132 0 +133 0 +134 0 +135 0 +136 0 +137 0 +138 0 +139 0 +140 0 +141 0 +142 0 +143 0 +144 0 +145 0 +146 0 +147 0 +148 0 +149 0 +150 0 +151 0 +152 0 +153 0 +154 0 +155 0 +156 0 +157 0 +158 0 +159 0 +160 0 +161 0 +162 0 +163 0 +164 0 +165 0 +166 0 +167 0 +168 0 +169 0 +170 0 +171 0 +172 0 +173 0 +174 0 +175 0 +176 0 +177 0 +178 0 +179 0 +180 0 +181 0 +182 0 +183 0 +184 0 +185 0 +186 0 +187 0 +188 0 +189 0 +190 0 +191 0 +192 0 +193 0 +194 0 +195 0 +196 0 +197 0 +198 0 +199 0 +200 0 +201 0 +202 0 +203 0 +204 0 +205 0 +206 0 +207 0 +208 0 +209 0 +210 0 +211 0 +212 0 +213 0 +214 0 +215 0 +216 0 +217 0 +218 0 +219 0 +220 0 +221 0 +222 0 +223 0 +224 0 +225 0 +226 0 +227 0 +228 0 +229 0 +230 0 +231 0 +232 0 +233 0 +234 0 +235 0 +236 0 +237 0 +238 0 +239 0 +240 0 +241 0 +242 0 +243 0 +244 0 +245 0 +246 0 +247 0 +248 0 +249 0 +250 0 +