diff test-data/picard_CollectInsertSizeMetrics_test1.tab @ 3:52fdfc45590a draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picard_CollectInsertSizeMetrics_test1.tab	Thu Jul 16 15:32:31 2015 -0400
@@ -0,0 +1,56 @@
+## htsjdk.samtools.metrics.StringHeader
+# picard.analysis.CollectInsertSizeMetrics HISTOGRAM_FILE=/Users/anton/galaxy-central/database/files/000/dataset_699.dat DEVIATIONS=10.0 HISTOGRAM_WIDTH=500 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_698.dat REFERENCE_SEQUENCE=/Users/anton/temp/mt.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
+## htsjdk.samtools.metrics.StringHeader
+# Started on: Sat Oct 04 10:14:44 EDT 2014
+
+## METRICS CLASS	picard.analysis.InsertSizeMetrics
+MEDIAN_INSERT_SIZE	MEDIAN_ABSOLUTE_DEVIATION	MIN_INSERT_SIZE	MAX_INSERT_SIZE	MEAN_INSERT_SIZE	STANDARD_DEVIATION	READ_PAIRS	PAIR_ORIENTATION	WIDTH_OF_10_PERCENT	WIDTH_OF_20_PERCENT	WIDTH_OF_30_PERCENT	WIDTH_OF_40_PERCENT	WIDTH_OF_50_PERCENT	WIDTH_OF_60_PERCENT	WIDTH_OF_70_PERCENT	WIDTH_OF_80_PERCENT	WIDTH_OF_90_PERCENT	WIDTH_OF_99_PERCENT	SAMPLE	LIBRARY	READ_GROUP
[phone]	193.969697	36.171207	99	FR	7	15	33	43	57	73	83	99	125	177			
+
+## HISTOGRAM	java.lang.Integer
+insert_size	All_Reads.fr_count
+112	1
+120	1
+132	2
+134	2
+138	5
+139	1
+140	1
+141	1
+151	2
+156	4
+157	1
+159	1
+161	2
+169	1
+172	1
+173	1
+177	3
+179	3
+182	3
+184	4
+185	2
+187	1
+192	1
+193	1
+194	3
+200	2
+201	5
+203	8
+205	1
+208	1
+213	4
+216	1
+222	1
+228	5
+229	2
+230	1
+231	3
+233	1
+236	2
+238	2
+241	4
+242	3
+250	2
+251	3
+