Mercurial > repos > devteam > picard
diff test-data/picard_CollectBaseDistributionByCycle_test1.tab @ 14:486d7500da69 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
| author | iuc |
|---|---|
| date | Mon, 16 Apr 2018 21:27:09 -0400 |
| parents | 52fdfc45590a |
| children |
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--- a/test-data/picard_CollectBaseDistributionByCycle_test1.tab Sat Jan 20 08:28:02 2018 -0500 +++ b/test-data/picard_CollectBaseDistributionByCycle_test1.tab Mon Apr 16 21:27:09 2018 -0400 @@ -1,7 +1,7 @@ ## htsjdk.samtools.metrics.StringHeader -# picard.analysis.CollectBaseDistributionByCycle CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_660.dat ALIGNED_READS_ONLY=true PF_READS_ONLY=true INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_659.dat REFERENCE_SEQUENCE=/Users/anton/temp/mt.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false +# CollectBaseDistributionByCycle CHART_OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_16.dat ALIGNED_READS_ONLY=true PF_READS_ONLY=true INPUT=picard_CollectBaseDistributionByCycle_bam OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_15.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false ## htsjdk.samtools.metrics.StringHeader -# Started on: Fri Oct 03 10:05:03 EDT 2014 +# Started on: Sat Apr 14 09:27:50 CEST 2018 ## METRICS CLASS picard.analysis.BaseDistributionByCycleMetrics READ_END CYCLE PCT_A PCT_C PCT_G PCT_T PCT_N