Mercurial > repos > devteam > picard
diff picard_macros.xml @ 14:486d7500da69 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
author | iuc |
---|---|
date | Mon, 16 Apr 2018 21:27:09 -0400 |
parents | 3d8d70436d02 |
children | a5a13ea16d17 |
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--- a/picard_macros.xml Sat Jan 20 08:28:02 2018 -0500 +++ b/picard_macros.xml Mon Apr 16 21:27:09 2018 -0400 @@ -7,11 +7,11 @@ </param> </xml> - <token name="@TOOL_VERSION@">2.7.1</token> + <token name="@TOOL_VERSION@">2.18.2</token> <xml name="requirements"> <requirements> - <requirement type="package" version="2.7.1">picard</requirement> + <requirement type="package" version="@TOOL_VERSION@">picard</requirement> <yield/> </requirements> </xml> @@ -27,6 +27,14 @@ export _JAVA_OPTIONS && ]]></token> + <token name="@handle_reference_source@"><![CDATA[ + #if str( $reference_source.reference_source_selector ) == "history": + ln -s '${reference_source.ref_file}' '${reference_fasta_filename}' && + #else: + #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) + #end if + ]]></token> + <token name="@more_info@"> ------ @@ -96,5 +104,18 @@ </token> + <xml name="citations"> + <citations> + <citation type="bibtex">@misc{Picard, + author = {Broad Institute}, + title = {Picard}, + publisher = {GitHub}, + journal = { Broad Institute, GitHub repository}, + url = {http://broadinstitute.github.io/picard/} + } + </citation> + </citations> + </xml> + </macros>