Mercurial > repos > devteam > picard
diff picard_CollectRnaSeqMetrics.xml @ 11:3d8d70436d02 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
---|---|
date | Wed, 08 Feb 2017 12:41:25 -0500 |
parents | 126c30841c38 |
children | a459ead5ab75 |
line wrap: on
line diff
--- a/picard_CollectRnaSeqMetrics.xml Thu Dec 08 06:43:24 2016 -0500 +++ b/picard_CollectRnaSeqMetrics.xml Wed Feb 08 12:41:25 2017 -0500 @@ -228,8 +228,8 @@ RIBOSOMAL_INTERVALS=File Location of rRNA sequences in genome, in interval_list format. If not specified no bases will be identified as being ribosomal. Format described here: - http://picard.sourceforge.net/javadoc/net/sf/picard/util/IntervalList.html and can be - generated from BED datasetes using Galaxy's wrapper for picard_BedToIntervalList tool + https://samtools.github.io/htsjdk/javadoc/htsjdk/htsjdk/samtools/util/IntervalList.html and can be + generated from BED datasetes using Galaxy's wrapper for picard_BedToIntervalList tool STRAND_SPECIFICITY=StrandSpecificity STRAND=StrandSpecificity For strand-specific library prep. For unpaired reads, use FIRST_READ_TRANSCRIPTION_STRAND