Mercurial > repos > devteam > picard
comparison picard_ReorderSam.xml @ 28:c943f4a04af0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
| author | iuc |
|---|---|
| date | Mon, 25 Sep 2023 08:31:14 +0000 |
| parents | e65f2d5fd3d8 |
| children |
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| 27:fdca9493e09b | 28:c943f4a04af0 |
|---|---|
| 19 #if str( $reference_source.reference_source_selector ) == "history": | 19 #if str( $reference_source.reference_source_selector ) == "history": |
| 20 | 20 |
| 21 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" | 21 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" |
| 22 QUIET=true | 22 QUIET=true |
| 23 VERBOSITY=ERROR | 23 VERBOSITY=ERROR |
| 24 @TMPDIR_OPTION@ | |
| 25 | 24 |
| 26 && | 25 && |
| 27 | 26 |
| 28 #else: | 27 #else: |
| 29 | 28 |
| 40 ALLOW_CONTIG_LENGTH_DISCORDANCE="${allow_contig_length_discordance}" | 39 ALLOW_CONTIG_LENGTH_DISCORDANCE="${allow_contig_length_discordance}" |
| 41 | 40 |
| 42 VALIDATION_STRINGENCY="${validation_stringency}" | 41 VALIDATION_STRINGENCY="${validation_stringency}" |
| 43 QUIET=true | 42 QUIET=true |
| 44 VERBOSITY=ERROR | 43 VERBOSITY=ERROR |
| 45 @TMPDIR_OPTION@ | |
| 46 | 44 |
| 47 ]]></command> | 45 ]]></command> |
| 48 | 46 |
| 49 <inputs> | 47 <inputs> |
| 50 | 48 |