Mercurial > repos > devteam > picard
comparison picard_EstimateLibraryComplexity.xml @ 28:c943f4a04af0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
| author | iuc |
|---|---|
| date | Mon, 25 Sep 2023 08:31:14 +0000 |
| parents | d837223d4ad2 |
| children |
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| 27:fdca9493e09b | 28:c943f4a04af0 |
|---|---|
| 22 OPTICAL_DUPLICATE_PIXEL_DISTANCE="${optical_duplicate_pixel_distance}" | 22 OPTICAL_DUPLICATE_PIXEL_DISTANCE="${optical_duplicate_pixel_distance}" |
| 23 | 23 |
| 24 VALIDATION_STRINGENCY="${validation_stringency}" | 24 VALIDATION_STRINGENCY="${validation_stringency}" |
| 25 QUIET=true | 25 QUIET=true |
| 26 VERBOSITY=ERROR | 26 VERBOSITY=ERROR |
| 27 @TMPDIR_OPTION@ | |
| 28 | 27 |
| 29 ]]></command> | 28 ]]></command> |
| 30 <inputs> | 29 <inputs> |
| 31 <param format="bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset" /> | 30 <param format="bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset" /> |
| 32 <param name="min_identical_bases" type="integer" value="5" label="The minimum number of bases at the starts of reads that must be identical for reads to be grouped together for duplicate detection" help="MIN_IDENTICAL_BASES; In effect total_reads / 4^max_id_bases reads will be compared at a time, so lower numbers will produce more accurate results but consume exponentially more memory and CPU; default=5"/> | 31 <param name="min_identical_bases" type="integer" value="5" label="The minimum number of bases at the starts of reads that must be identical for reads to be grouped together for duplicate detection" help="MIN_IDENTICAL_BASES; In effect total_reads / 4^max_id_bases reads will be compared at a time, so lower numbers will produce more accurate results but consume exponentially more memory and CPU; default=5"/> |